miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 5' -60.2 NC_006273.1 + 232939 0.67 0.774472
Target:  5'- cGGCcgCUCCCaCuGCU-CGCGGUCCaGCu -3'
miRNA:   3'- -UCGaaGAGGG-GcUGAgGCGCCAGG-CG- -5'
30209 5' -60.2 NC_006273.1 + 179249 0.67 0.774472
Target:  5'- cGCgUCggUCgCCGcCUCCGCGGcCCGUu -3'
miRNA:   3'- uCGaAG--AGgGGCuGAGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 38046 0.67 0.774472
Target:  5'- cGGCcgCUCCCaCuGCU-CGCGGUCCaGCu -3'
miRNA:   3'- -UCGaaGAGGG-GcUGAgGCGCCAGG-CG- -5'
30209 5' -60.2 NC_006273.1 + 105890 0.67 0.774472
Target:  5'- cGCUgcUUUCCCCGAgCUCCGaCGccUCGCg -3'
miRNA:   3'- uCGA--AGAGGGGCU-GAGGC-GCcaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 101973 0.67 0.774472
Target:  5'- aGGUcgUUCUCCUCGACg-CGCGG-CgGCg -3'
miRNA:   3'- -UCG--AAGAGGGGCUGagGCGCCaGgCG- -5'
30209 5' -60.2 NC_006273.1 + 200696 0.68 0.765656
Target:  5'- cGGCUUCa---UGGCUCCGaaGGUCCGCu -3'
miRNA:   3'- -UCGAAGagggGCUGAGGCg-CCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 94557 0.68 0.765656
Target:  5'- cGCUcCUCCCCgGGCUCCGgccCGGgaucccucgCUGCu -3'
miRNA:   3'- uCGAaGAGGGG-CUGAGGC---GCCa--------GGCG- -5'
30209 5' -60.2 NC_006273.1 + 68190 0.68 0.756735
Target:  5'- cGCUgUUUaCgCCGGcCUCCGCGG-CCGCu -3'
miRNA:   3'- uCGA-AGA-GgGGCU-GAGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 39563 0.68 0.747717
Target:  5'- aGGCc---CUCCGGCcCCGCGG-CCGCg -3'
miRNA:   3'- -UCGaagaGGGGCUGaGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 30554 0.68 0.747717
Target:  5'- cAGCgUCUCCUCGgacGCUCCGUcGUCCu- -3'
miRNA:   3'- -UCGaAGAGGGGC---UGAGGCGcCAGGcg -5'
30209 5' -60.2 NC_006273.1 + 234456 0.68 0.747717
Target:  5'- aGGCc---CUCCGGCcCCGCGG-CCGCg -3'
miRNA:   3'- -UCGaagaGGGGCUGaGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 21793 0.68 0.729423
Target:  5'- uGGCgcgUCUCUCCGGCggCUGUGGcuaCCGUc -3'
miRNA:   3'- -UCGa--AGAGGGGCUGa-GGCGCCa--GGCG- -5'
30209 5' -60.2 NC_006273.1 + 95056 0.69 0.710832
Target:  5'- cGGCcuagCCgCCGGCUCU-CGGUCCGCc -3'
miRNA:   3'- -UCGaagaGG-GGCUGAGGcGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 139792 0.69 0.700503
Target:  5'- ---cUCUCCCUcaacugccgucagGuCUCCGgGGUCCGCc -3'
miRNA:   3'- ucgaAGAGGGG-------------CuGAGGCgCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 30672 0.69 0.692007
Target:  5'- cGGCUUC-CUgCGGCcggCCGCGGUgCCGg -3'
miRNA:   3'- -UCGAAGaGGgGCUGa--GGCGCCA-GGCg -5'
30209 5' -60.2 NC_006273.1 + 73176 0.69 0.682524
Target:  5'- cGCUUC-CUCCGGCUgcagcgcaCCGCGG-CCGa -3'
miRNA:   3'- uCGAAGaGGGGCUGA--------GGCGCCaGGCg -5'
30209 5' -60.2 NC_006273.1 + 120275 0.69 0.682524
Target:  5'- cGGCUUCggCCUCG-CUgaUCGCGG-CCGCu -3'
miRNA:   3'- -UCGAAGa-GGGGCuGA--GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 94598 0.69 0.682524
Target:  5'- cGGCgacCUCCgCCGGCUUCcCGGUCCa- -3'
miRNA:   3'- -UCGaa-GAGG-GGCUGAGGcGCCAGGcg -5'
30209 5' -60.2 NC_006273.1 + 94243 0.69 0.673005
Target:  5'- cGGCagggUUCCGGCcgugCUGCGGUCCGCa -3'
miRNA:   3'- -UCGaagaGGGGCUGa---GGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 130210 0.69 0.673005
Target:  5'- cGGCgaccgUUUCCCCGuCcUCGCGGacgCCGCu -3'
miRNA:   3'- -UCGa----AGAGGGGCuGaGGCGCCa--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.