miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 5' -60.2 NC_006273.1 + 21583 0.66 0.86252
Target:  5'- cGGCUgccUgUUCCUGcuGCUaCGCGGUCCGUc -3'
miRNA:   3'- -UCGA---AgAGGGGC--UGAgGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 21793 0.68 0.729423
Target:  5'- uGGCgcgUCUCUCCGGCggCUGUGGcuaCCGUc -3'
miRNA:   3'- -UCGa--AGAGGGGCUGa-GGCGCCa--GGCG- -5'
30209 5' -60.2 NC_006273.1 + 30554 0.68 0.747717
Target:  5'- cAGCgUCUCCUCGgacGCUCCGUcGUCCu- -3'
miRNA:   3'- -UCGaAGAGGGGC---UGAGGCGcCAGGcg -5'
30209 5' -60.2 NC_006273.1 + 30672 0.69 0.692007
Target:  5'- cGGCUUC-CUgCGGCcggCCGCGGUgCCGg -3'
miRNA:   3'- -UCGAAGaGGgGCUGa--GGCGCCA-GGCg -5'
30209 5' -60.2 NC_006273.1 + 36489 0.66 0.86252
Target:  5'- uGCUguUUUCCguguugCCGACggcggCGCGGUCCGUc -3'
miRNA:   3'- uCGA--AGAGG------GGCUGag---GCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 38046 0.67 0.774472
Target:  5'- cGGCcgCUCCCaCuGCU-CGCGGUCCaGCu -3'
miRNA:   3'- -UCGaaGAGGG-GcUGAgGCGCCAGG-CG- -5'
30209 5' -60.2 NC_006273.1 + 38259 0.66 0.824767
Target:  5'- cGGCacggUCCCCGACgCCGCcGGacCCGCc -3'
miRNA:   3'- -UCGaag-AGGGGCUGaGGCG-CCa-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 38349 0.71 0.558412
Target:  5'- cGCgUCcgCCCCGACcaCCGCGugcgcGUCCGCg -3'
miRNA:   3'- uCGaAGa-GGGGCUGa-GGCGC-----CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 38958 0.66 0.855313
Target:  5'- uGCUcugCUCCaCCagcgagaGCUCCGUGGUgCUGCa -3'
miRNA:   3'- uCGAa--GAGG-GGc------UGAGGCGCCA-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 39563 0.68 0.747717
Target:  5'- aGGCc---CUCCGGCcCCGCGG-CCGCg -3'
miRNA:   3'- -UCGaagaGGGGCUGaGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 43325 0.75 0.346751
Target:  5'- aAGCgucgUCgCCCCgGACUgcgcCCGCGGUCUGCu -3'
miRNA:   3'- -UCGa---AGaGGGG-CUGA----GGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 68190 0.68 0.756735
Target:  5'- cGCUgUUUaCgCCGGcCUCCGCGG-CCGCu -3'
miRNA:   3'- uCGA-AGA-GgGGCU-GAGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 73176 0.69 0.682524
Target:  5'- cGCUUC-CUCCGGCUgcagcgcaCCGCGG-CCGa -3'
miRNA:   3'- uCGAAGaGGGGCUGA--------GGCGCCaGGCg -5'
30209 5' -60.2 NC_006273.1 + 80366 0.66 0.855313
Target:  5'- ---cUCUCCCCcGCUCCaaGCGGgagCgGCg -3'
miRNA:   3'- ucgaAGAGGGGcUGAGG--CGCCa--GgCG- -5'
30209 5' -60.2 NC_006273.1 + 81392 0.67 0.80022
Target:  5'- uAGCggCUCUCCaGCgCCuCGGUCUGCg -3'
miRNA:   3'- -UCGaaGAGGGGcUGaGGcGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 85795 0.7 0.634707
Target:  5'- cGGCaUCUagaCCgCCGccACUCgCGUGGUCCGCu -3'
miRNA:   3'- -UCGaAGA---GG-GGC--UGAG-GCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 94243 0.69 0.673005
Target:  5'- cGGCagggUUCCGGCcgugCUGCGGUCCGCa -3'
miRNA:   3'- -UCGaagaGGGGCUGa---GGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 94557 0.68 0.765656
Target:  5'- cGCUcCUCCCCgGGCUCCGgccCGGgaucccucgCUGCu -3'
miRNA:   3'- uCGAaGAGGGG-CUGAGGC---GCCa--------GGCG- -5'
30209 5' -60.2 NC_006273.1 + 94598 0.69 0.682524
Target:  5'- cGGCgacCUCCgCCGGCUUCcCGGUCCa- -3'
miRNA:   3'- -UCGaa-GAGG-GGCUGAGGcGCCAGGcg -5'
30209 5' -60.2 NC_006273.1 + 94973 0.66 0.83265
Target:  5'- cGGCggCUCCCU--CUCgGCGGcUCCGg -3'
miRNA:   3'- -UCGaaGAGGGGcuGAGgCGCC-AGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.