miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 5' -60.2 NC_006273.1 + 95056 0.69 0.710832
Target:  5'- cGGCcuagCCgCCGGCUCU-CGGUCCGCc -3'
miRNA:   3'- -UCGaagaGG-GGCUGAGGcGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 95416 0.66 0.827939
Target:  5'- gAGUUUUUCCCCGGCacgaacgcacguccCCGUGGgcuccaCGCg -3'
miRNA:   3'- -UCGAAGAGGGGCUGa-------------GGCGCCag----GCG- -5'
30209 5' -60.2 NC_006273.1 + 96994 0.66 0.83265
Target:  5'- aGGCcgUCUCCCaguguGACcugcgCCGCGGUCUu- -3'
miRNA:   3'- -UCGa-AGAGGGg----CUGa----GGCGCCAGGcg -5'
30209 5' -60.2 NC_006273.1 + 101973 0.67 0.774472
Target:  5'- aGGUcgUUCUCCUCGACg-CGCGG-CgGCg -3'
miRNA:   3'- -UCG--AAGAGGGGCUGagGCGCCaGgCG- -5'
30209 5' -60.2 NC_006273.1 + 104736 0.7 0.61552
Target:  5'- aGGUUUCUCCacaCCGugUCCGU-GUCgGCa -3'
miRNA:   3'- -UCGAAGAGG---GGCugAGGCGcCAGgCG- -5'
30209 5' -60.2 NC_006273.1 + 105890 0.67 0.774472
Target:  5'- cGCUgcUUUCCCCGAgCUCCGaCGccUCGCg -3'
miRNA:   3'- uCGA--AGAGGGGCU-GAGGC-GCcaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 108382 0.66 0.824767
Target:  5'- cGUUUCUCCugaugCCGGCcgccaCCGCGGUCUcCa -3'
miRNA:   3'- uCGAAGAGG-----GGCUGa----GGCGCCAGGcG- -5'
30209 5' -60.2 NC_006273.1 + 118196 0.66 0.83265
Target:  5'- cGGCUg-UCgCCCGaacGCUCgGCGGacgCCGCu -3'
miRNA:   3'- -UCGAagAG-GGGC---UGAGgCGCCa--GGCG- -5'
30209 5' -60.2 NC_006273.1 + 119787 0.66 0.840373
Target:  5'- cGCUg--UCCCGGCacCCGCaccGUCCGCa -3'
miRNA:   3'- uCGAagaGGGGCUGa-GGCGc--CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 120275 0.69 0.682524
Target:  5'- cGGCUUCggCCUCG-CUgaUCGCGG-CCGCu -3'
miRNA:   3'- -UCGAAGa-GGGGCuGA--GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 124453 0.69 0.673005
Target:  5'- cGCggCUCgCCGACgcugcgCuCGCGGUCCaGCc -3'
miRNA:   3'- uCGaaGAGgGGCUGa-----G-GCGCCAGG-CG- -5'
30209 5' -60.2 NC_006273.1 + 130206 0.66 0.86252
Target:  5'- cGCcg-UCUCCGGCUaccugggcgaggCCGCGGcgCCGCg -3'
miRNA:   3'- uCGaagAGGGGCUGA------------GGCGCCa-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 130210 0.69 0.673005
Target:  5'- cGGCgaccgUUUCCCCGuCcUCGCGGacgCCGCu -3'
miRNA:   3'- -UCGa----AGAGGGGCuGaGGCGCCa--GGCG- -5'
30209 5' -60.2 NC_006273.1 + 130261 0.67 0.80022
Target:  5'- aAGCUgCUCUuuGgACUCaaCGUGcGUCCGCa -3'
miRNA:   3'- -UCGAaGAGGggC-UGAG--GCGC-CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 139792 0.69 0.700503
Target:  5'- ---cUCUCCCUcaacugccgucagGuCUCCGgGGUCCGCc -3'
miRNA:   3'- ucgaAGAGGGG-------------CuGAGGCgCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 144407 0.73 0.458541
Target:  5'- cGGCUgUCUgCCCGGCgCCGCGG-CgGCg -3'
miRNA:   3'- -UCGA-AGAgGGGCUGaGGCGCCaGgCG- -5'
30209 5' -60.2 NC_006273.1 + 150529 0.66 0.855313
Target:  5'- aAGCccUCcaCCCUGACggccgCCGCGG-CCGUc -3'
miRNA:   3'- -UCGa-AGa-GGGGCUGa----GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 153780 0.7 0.653887
Target:  5'- cGCUUCggCCuCCGcCgcggCCGCGG-CCGCc -3'
miRNA:   3'- uCGAAGa-GG-GGCuGa---GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 178556 0.67 0.791762
Target:  5'- cAGCcUCUCUucgCUGGCUaaugCCgGCGGUCUGCa -3'
miRNA:   3'- -UCGaAGAGG---GGCUGA----GG-CGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 179249 0.67 0.774472
Target:  5'- cGCgUCggUCgCCGcCUCCGCGGcCCGUu -3'
miRNA:   3'- uCGaAG--AGgGGCuGAGGCGCCaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.