miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30209 5' -60.2 NC_006273.1 + 234456 0.68 0.747717
Target:  5'- aGGCc---CUCCGGCcCCGCGG-CCGCg -3'
miRNA:   3'- -UCGaagaGGGGCUGaGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 233242 0.71 0.558412
Target:  5'- cGCgUCcgCCCCGACcaCCGCGugcgcGUCCGCg -3'
miRNA:   3'- uCGaAGa-GGGGCUGa-GGCGC-----CAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 233152 0.66 0.824767
Target:  5'- cGGCacggUCCCCGACgCCGCcGGacCCGCc -3'
miRNA:   3'- -UCGaag-AGGGGCUGaGGCG-CCa-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 232939 0.67 0.774472
Target:  5'- cGGCcgCUCCCaCuGCU-CGCGGUCCaGCu -3'
miRNA:   3'- -UCGaaGAGGG-GcUGAgGCGCCAGG-CG- -5'
30209 5' -60.2 NC_006273.1 + 227678 0.67 0.791762
Target:  5'- -uCUcCUCCCCG-CUgCCGCGGccacugCCGCc -3'
miRNA:   3'- ucGAaGAGGGGCuGA-GGCGCCa-----GGCG- -5'
30209 5' -60.2 NC_006273.1 + 221371 0.7 0.634707
Target:  5'- cGGCg-CUCCCCG-CUCCGCcaccCCGCg -3'
miRNA:   3'- -UCGaaGAGGGGCuGAGGCGcca-GGCG- -5'
30209 5' -60.2 NC_006273.1 + 216568 0.7 0.614561
Target:  5'- cAGCUcCUCCaaCCGACacucgccgcgcaaUCCGCGGUCgaaGCg -3'
miRNA:   3'- -UCGAaGAGG--GGCUG-------------AGGCGCCAGg--CG- -5'
30209 5' -60.2 NC_006273.1 + 200696 0.68 0.765656
Target:  5'- cGGCUUCa---UGGCUCCGaaGGUCCGCu -3'
miRNA:   3'- -UCGAAGagggGCUGAGGCg-CCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 200380 0.66 0.86252
Target:  5'- uGGCUUUaCCgCCGucGCUCCGCGucgcuucgCCGCc -3'
miRNA:   3'- -UCGAAGaGG-GGC--UGAGGCGCca------GGCG- -5'
30209 5' -60.2 NC_006273.1 + 198850 0.8 0.176908
Target:  5'- aGGUcacCUCCUCcGCUCCGCGGUCCGCc -3'
miRNA:   3'- -UCGaa-GAGGGGcUGAGGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 198511 1.11 0.001481
Target:  5'- gAGCUUCUCCCCGACUCCGCGGUCCGCg -3'
miRNA:   3'- -UCGAAGAGGGGCUGAGGCGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 197159 0.74 0.432951
Target:  5'- cGUUUC-CUCCGGCgCCGCGGuuUCCGCc -3'
miRNA:   3'- uCGAAGaGGGGCUGaGGCGCC--AGGCG- -5'
30209 5' -60.2 NC_006273.1 + 186389 0.66 0.855313
Target:  5'- uGGCUUugCUCUCUGACUCgGaGGaguugCCGCa -3'
miRNA:   3'- -UCGAA--GAGGGGCUGAGgCgCCa----GGCG- -5'
30209 5' -60.2 NC_006273.1 + 179249 0.67 0.774472
Target:  5'- cGCgUCggUCgCCGcCUCCGCGGcCCGUu -3'
miRNA:   3'- uCGaAG--AGgGGCuGAGGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 178556 0.67 0.791762
Target:  5'- cAGCcUCUCUucgCUGGCUaaugCCgGCGGUCUGCa -3'
miRNA:   3'- -UCGaAGAGG---GGCUGA----GG-CGCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 153780 0.7 0.653887
Target:  5'- cGCUUCggCCuCCGcCgcggCCGCGG-CCGCc -3'
miRNA:   3'- uCGAAGa-GG-GGCuGa---GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 150529 0.66 0.855313
Target:  5'- aAGCccUCcaCCCUGACggccgCCGCGG-CCGUc -3'
miRNA:   3'- -UCGa-AGa-GGGGCUGa----GGCGCCaGGCG- -5'
30209 5' -60.2 NC_006273.1 + 144407 0.73 0.458541
Target:  5'- cGGCUgUCUgCCCGGCgCCGCGG-CgGCg -3'
miRNA:   3'- -UCGA-AGAgGGGCUGaGGCGCCaGgCG- -5'
30209 5' -60.2 NC_006273.1 + 139792 0.69 0.700503
Target:  5'- ---cUCUCCCUcaacugccgucagGuCUCCGgGGUCCGCc -3'
miRNA:   3'- ucgaAGAGGGG-------------CuGAGGCgCCAGGCG- -5'
30209 5' -60.2 NC_006273.1 + 130261 0.67 0.80022
Target:  5'- aAGCUgCUCUuuGgACUCaaCGUGcGUCCGCa -3'
miRNA:   3'- -UCGAaGAGGggC-UGAG--GCGC-CAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.