Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30209 | 5' | -60.2 | NC_006273.1 | + | 130261 | 0.67 | 0.80022 |
Target: 5'- aAGCUgCUCUuuGgACUCaaCGUGcGUCCGCa -3' miRNA: 3'- -UCGAaGAGGggC-UGAG--GCGC-CAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 120275 | 0.69 | 0.682524 |
Target: 5'- cGGCUUCggCCUCG-CUgaUCGCGG-CCGCu -3' miRNA: 3'- -UCGAAGa-GGGGCuGA--GGCGCCaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 139792 | 0.69 | 0.700503 |
Target: 5'- ---cUCUCCCUcaacugccgucagGuCUCCGgGGUCCGCc -3' miRNA: 3'- ucgaAGAGGGG-------------CuGAGGCgCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 95056 | 0.69 | 0.710832 |
Target: 5'- cGGCcuagCCgCCGGCUCU-CGGUCCGCc -3' miRNA: 3'- -UCGaagaGG-GGCUGAGGcGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 234456 | 0.68 | 0.747717 |
Target: 5'- aGGCc---CUCCGGCcCCGCGG-CCGCg -3' miRNA: 3'- -UCGaagaGGGGCUGaGGCGCCaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 30554 | 0.68 | 0.747717 |
Target: 5'- cAGCgUCUCCUCGgacGCUCCGUcGUCCu- -3' miRNA: 3'- -UCGaAGAGGGGC---UGAGGCGcCAGGcg -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 94557 | 0.68 | 0.765656 |
Target: 5'- cGCUcCUCCCCgGGCUCCGgccCGGgaucccucgCUGCu -3' miRNA: 3'- uCGAaGAGGGG-CUGAGGC---GCCa--------GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 200696 | 0.68 | 0.765656 |
Target: 5'- cGGCUUCa---UGGCUCCGaaGGUCCGCu -3' miRNA: 3'- -UCGAAGagggGCUGAGGCg-CCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 232939 | 0.67 | 0.774472 |
Target: 5'- cGGCcgCUCCCaCuGCU-CGCGGUCCaGCu -3' miRNA: 3'- -UCGaaGAGGG-GcUGAgGCGCCAGG-CG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 73176 | 0.69 | 0.682524 |
Target: 5'- cGCUUC-CUCCGGCUgcagcgcaCCGCGG-CCGa -3' miRNA: 3'- uCGAAGaGGGGCUGA--------GGCGCCaGGCg -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 94598 | 0.69 | 0.682524 |
Target: 5'- cGGCgacCUCCgCCGGCUUCcCGGUCCa- -3' miRNA: 3'- -UCGaa-GAGG-GGCUGAGGcGCCAGGcg -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 124453 | 0.69 | 0.673005 |
Target: 5'- cGCggCUCgCCGACgcugcgCuCGCGGUCCaGCc -3' miRNA: 3'- uCGaaGAGgGGCUGa-----G-GCGCCAGG-CG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 198850 | 0.8 | 0.176908 |
Target: 5'- aGGUcacCUCCUCcGCUCCGCGGUCCGCc -3' miRNA: 3'- -UCGaa-GAGGGGcUGAGGCGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 43325 | 0.75 | 0.346751 |
Target: 5'- aAGCgucgUCgCCCCgGACUgcgcCCGCGGUCUGCu -3' miRNA: 3'- -UCGa---AGaGGGG-CUGA----GGCGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 144407 | 0.73 | 0.458541 |
Target: 5'- cGGCUgUCUgCCCGGCgCCGCGG-CgGCg -3' miRNA: 3'- -UCGA-AGAgGGGCUGaGGCGCCaGgCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 233242 | 0.71 | 0.558412 |
Target: 5'- cGCgUCcgCCCCGACcaCCGCGugcgcGUCCGCg -3' miRNA: 3'- uCGaAGa-GGGGCUGa-GGCGC-----CAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 216568 | 0.7 | 0.614561 |
Target: 5'- cAGCUcCUCCaaCCGACacucgccgcgcaaUCCGCGGUCgaaGCg -3' miRNA: 3'- -UCGAaGAGG--GGCUG-------------AGGCGCCAGg--CG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 221371 | 0.7 | 0.634707 |
Target: 5'- cGGCg-CUCCCCG-CUCCGCcaccCCGCg -3' miRNA: 3'- -UCGaaGAGGGGCuGAGGCGcca-GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 153780 | 0.7 | 0.653887 |
Target: 5'- cGCUUCggCCuCCGcCgcggCCGCGG-CCGCc -3' miRNA: 3'- uCGAAGa-GG-GGCuGa---GGCGCCaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 94243 | 0.69 | 0.673005 |
Target: 5'- cGGCagggUUCCGGCcgugCUGCGGUCCGCa -3' miRNA: 3'- -UCGaagaGGGGCUGa---GGCGCCAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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