Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30209 | 5' | -60.2 | NC_006273.1 | + | 197159 | 0.74 | 0.432951 |
Target: 5'- cGUUUC-CUCCGGCgCCGCGGuuUCCGCc -3' miRNA: 3'- uCGAAGaGGGGCUGaGGCGCC--AGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 38259 | 0.66 | 0.824767 |
Target: 5'- cGGCacggUCCCCGACgCCGCcGGacCCGCc -3' miRNA: 3'- -UCGaag-AGGGGCUGaGGCG-CCa-GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 96994 | 0.66 | 0.83265 |
Target: 5'- aGGCcgUCUCCCaguguGACcugcgCCGCGGUCUu- -3' miRNA: 3'- -UCGa-AGAGGGg----CUGa----GGCGCCAGGcg -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 21583 | 0.66 | 0.86252 |
Target: 5'- cGGCUgccUgUUCCUGcuGCUaCGCGGUCCGUc -3' miRNA: 3'- -UCGA---AgAGGGGC--UGAgGCGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 130210 | 0.69 | 0.673005 |
Target: 5'- cGGCgaccgUUUCCCCGuCcUCGCGGacgCCGCu -3' miRNA: 3'- -UCGa----AGAGGGGCuGaGGCGCCa--GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 30672 | 0.69 | 0.692007 |
Target: 5'- cGGCUUC-CUgCGGCcggCCGCGGUgCCGg -3' miRNA: 3'- -UCGAAGaGGgGCUGa--GGCGCCA-GGCg -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 39563 | 0.68 | 0.747717 |
Target: 5'- aGGCc---CUCCGGCcCCGCGG-CCGCg -3' miRNA: 3'- -UCGaagaGGGGCUGaGGCGCCaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 68190 | 0.68 | 0.756735 |
Target: 5'- cGCUgUUUaCgCCGGcCUCCGCGG-CCGCu -3' miRNA: 3'- uCGA-AGA-GgGGCU-GAGGCGCCaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 38046 | 0.67 | 0.774472 |
Target: 5'- cGGCcgCUCCCaCuGCU-CGCGGUCCaGCu -3' miRNA: 3'- -UCGaaGAGGG-GcUGAgGCGCCAGG-CG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 108382 | 0.66 | 0.824767 |
Target: 5'- cGUUUCUCCugaugCCGGCcgccaCCGCGGUCUcCa -3' miRNA: 3'- uCGAAGAGG-----GGCUGa----GGCGCCAGGcG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 227678 | 0.67 | 0.791762 |
Target: 5'- -uCUcCUCCCCG-CUgCCGCGGccacugCCGCc -3' miRNA: 3'- ucGAaGAGGGGCuGA-GGCGCCa-----GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 105890 | 0.67 | 0.774472 |
Target: 5'- cGCUgcUUUCCCCGAgCUCCGaCGccUCGCg -3' miRNA: 3'- uCGA--AGAGGGGCU-GAGGC-GCcaGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 38349 | 0.71 | 0.558412 |
Target: 5'- cGCgUCcgCCCCGACcaCCGCGugcgcGUCCGCg -3' miRNA: 3'- uCGaAGa-GGGGCUGa-GGCGC-----CAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 178556 | 0.67 | 0.791762 |
Target: 5'- cAGCcUCUCUucgCUGGCUaaugCCgGCGGUCUGCa -3' miRNA: 3'- -UCGaAGAGG---GGCUGA----GG-CGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 104736 | 0.7 | 0.61552 |
Target: 5'- aGGUUUCUCCacaCCGugUCCGU-GUCgGCa -3' miRNA: 3'- -UCGAAGAGG---GGCugAGGCGcCAGgCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 101973 | 0.67 | 0.774472 |
Target: 5'- aGGUcgUUCUCCUCGACg-CGCGG-CgGCg -3' miRNA: 3'- -UCG--AAGAGGGGCUGagGCGCCaGgCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 81392 | 0.67 | 0.80022 |
Target: 5'- uAGCggCUCUCCaGCgCCuCGGUCUGCg -3' miRNA: 3'- -UCGaaGAGGGGcUGaGGcGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 118196 | 0.66 | 0.83265 |
Target: 5'- cGGCUg-UCgCCCGaacGCUCgGCGGacgCCGCu -3' miRNA: 3'- -UCGAagAG-GGGC---UGAGgCGCCa--GGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 85795 | 0.7 | 0.634707 |
Target: 5'- cGGCaUCUagaCCgCCGccACUCgCGUGGUCCGCu -3' miRNA: 3'- -UCGaAGA---GG-GGC--UGAG-GCGCCAGGCG- -5' |
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30209 | 5' | -60.2 | NC_006273.1 | + | 21793 | 0.68 | 0.729423 |
Target: 5'- uGGCgcgUCUCUCCGGCggCUGUGGcuaCCGUc -3' miRNA: 3'- -UCGa--AGAGGGGCUGa-GGCGCCa--GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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