miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 133452 0.65 0.979333
Target:  5'- cUGCGCCGuuauuauCGCaGUCac-GGCGGCGUGCa -3'
miRNA:   3'- -AUGUGGU-------GUG-CAGcacUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 70936 0.66 0.977283
Target:  5'- gACGCCugGgCG-CGac-GCGGCGUGCu -3'
miRNA:   3'- aUGUGGugU-GCaGCacuCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 181187 0.66 0.977283
Target:  5'- gGCACCGCcuccgaACGcUCGUGAGCaacAGuCG-GCa -3'
miRNA:   3'- aUGUGGUG------UGC-AGCACUCG---UC-GCaCG- -5'
30210 3' -54.7 NC_006273.1 + 199994 0.66 0.977283
Target:  5'- gAgGCCAacaAUuUCGUGAuCGGCGUGCu -3'
miRNA:   3'- aUgUGGUg--UGcAGCACUcGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 179910 0.66 0.977283
Target:  5'- aUGCugCGCGgGUUagGAaauGCGGCGUGCc -3'
miRNA:   3'- -AUGugGUGUgCAGcaCU---CGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 218972 0.66 0.977283
Target:  5'- aGCAUCGCuaccACGUCGUGcGGUAcccGCGUaGCa -3'
miRNA:   3'- aUGUGGUG----UGCAGCAC-UCGU---CGCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 147867 0.66 0.977283
Target:  5'- --uGCCGC-CGgc-UGAGguGCGUGCu -3'
miRNA:   3'- augUGGUGuGCagcACUCguCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 170743 0.66 0.977046
Target:  5'- aGCGCCcaACAgGUCcacggggGUG-GCAGCGUGg -3'
miRNA:   3'- aUGUGG--UGUgCAG-------CACuCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 37153 0.66 0.974835
Target:  5'- cGCACgCACAgGUCGgccaAGUcgcGCGUGCa -3'
miRNA:   3'- aUGUG-GUGUgCAGCac--UCGu--CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 142193 0.66 0.974835
Target:  5'- aGCgACCcCuCGgacagCGUGAGCGGCGUccGCg -3'
miRNA:   3'- aUG-UGGuGuGCa----GCACUCGUCGCA--CG- -5'
30210 3' -54.7 NC_006273.1 + 143664 0.66 0.974835
Target:  5'- aACAUCACGCuauuuUCGcGGGCGG-GUGCg -3'
miRNA:   3'- aUGUGGUGUGc----AGCaCUCGUCgCACG- -5'
30210 3' -54.7 NC_006273.1 + 70327 0.66 0.974835
Target:  5'- cGCGCCGUGCGUcugccCGUGAGCAcCGcUGCc -3'
miRNA:   3'- aUGUGGUGUGCA-----GCACUCGUcGC-ACG- -5'
30210 3' -54.7 NC_006273.1 + 94938 0.66 0.9722
Target:  5'- cACGuCgCACACGUUGUGAugaucuaacaaGCccGGCGUGUa -3'
miRNA:   3'- aUGU-G-GUGUGCAGCACU-----------CG--UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 209724 0.66 0.9722
Target:  5'- uUACgAUCAacgGCGgcaCGUGaAGCAGCGUGUa -3'
miRNA:   3'- -AUG-UGGUg--UGCa--GCAC-UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 203916 0.66 0.9722
Target:  5'- cGCGCCGCGCGagguguaGUGGGCGGUa--- -3'
miRNA:   3'- aUGUGGUGUGCag-----CACUCGUCGcacg -5'
30210 3' -54.7 NC_006273.1 + 204630 0.66 0.9722
Target:  5'- -cCGCCGCcgGCGcCGUucucGGGCAGCGaggGCa -3'
miRNA:   3'- auGUGGUG--UGCaGCA----CUCGUCGCa--CG- -5'
30210 3' -54.7 NC_006273.1 + 131254 0.66 0.9722
Target:  5'- -cCAUCGCcGCGUCGggucuCGGCGUGCg -3'
miRNA:   3'- auGUGGUG-UGCAGCacuc-GUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 134841 0.66 0.971372
Target:  5'- aAC-CCGCACGaUCccuaucuggagacgGUGGGCGGCaUGCg -3'
miRNA:   3'- aUGuGGUGUGC-AG--------------CACUCGUCGcACG- -5'
30210 3' -54.7 NC_006273.1 + 9164 0.66 0.969371
Target:  5'- cACACCu--CGUCG-GA-CAGCGUGUc -3'
miRNA:   3'- aUGUGGuguGCAGCaCUcGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 193918 0.66 0.969371
Target:  5'- aGCGCCG--UGUUGUGAGCAGaCGacguuggaUGCg -3'
miRNA:   3'- aUGUGGUguGCAGCACUCGUC-GC--------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.