Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30210 | 3' | -54.7 | NC_006273.1 | + | 131089 | 0.66 | 0.966343 |
Target: 5'- aACACCG-ACGUCGUaaacaucuagccGuGCAGCGUuacGCg -3' miRNA: 3'- aUGUGGUgUGCAGCA------------CuCGUCGCA---CG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 147867 | 0.66 | 0.977283 |
Target: 5'- --uGCCGC-CGgc-UGAGguGCGUGCu -3' miRNA: 3'- augUGGUGuGCagcACUCguCGCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 209724 | 0.66 | 0.9722 |
Target: 5'- uUACgAUCAacgGCGgcaCGUGaAGCAGCGUGUa -3' miRNA: 3'- -AUG-UGGUg--UGCa--GCAC-UCGUCGCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 196143 | 0.66 | 0.966343 |
Target: 5'- cGCGCCAUGCGcaaGUGGucGCAGCGcgacGCg -3' miRNA: 3'- aUGUGGUGUGCag-CACU--CGUCGCa---CG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 179910 | 0.66 | 0.977283 |
Target: 5'- aUGCugCGCGgGUUagGAaauGCGGCGUGCc -3' miRNA: 3'- -AUGugGUGUgCAGcaCU---CGUCGCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 218972 | 0.66 | 0.977283 |
Target: 5'- aGCAUCGCuaccACGUCGUGcGGUAcccGCGUaGCa -3' miRNA: 3'- aUGUGGUG----UGCAGCAC-UCGU---CGCA-CG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 216206 | 0.67 | 0.956008 |
Target: 5'- gACGCCGCAuuCGUUGUacgGAGC-GCG-GCa -3' miRNA: 3'- aUGUGGUGU--GCAGCA---CUCGuCGCaCG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 61460 | 0.67 | 0.959667 |
Target: 5'- gGCACgaagaaACGCGcCGUGAGCgccuggugaucGGCGUGg -3' miRNA: 3'- aUGUGg-----UGUGCaGCACUCG-----------UCGCACg -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 61751 | 0.67 | 0.959667 |
Target: 5'- aGCGCCguGCGCGccuUCGUGGGU-GCGUuGCc -3' miRNA: 3'- aUGUGG--UGUGC---AGCACUCGuCGCA-CG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 68829 | 0.67 | 0.959667 |
Target: 5'- gGCGCCGCGCGUCaucaaaaaGuGCAGgaacUGUGCa -3' miRNA: 3'- aUGUGGUGUGCAGca------CuCGUC----GCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 42046 | 0.67 | 0.956008 |
Target: 5'- gGCGCCcgguuuACGUGUCGgGGGCGGCGguUGCu -3' miRNA: 3'- aUGUGG------UGUGCAGCaCUCGUCGC--ACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 168948 | 0.67 | 0.959667 |
Target: 5'- gUGCA-CGCGCGUCagcAGCuGCGUGCu -3' miRNA: 3'- -AUGUgGUGUGCAGcacUCGuCGCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 201648 | 0.67 | 0.956008 |
Target: 5'- cGCGCCAguaUACGUCacGAGUacacGGCGUGUa -3' miRNA: 3'- aUGUGGU---GUGCAGcaCUCG----UCGCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 76611 | 0.67 | 0.96311 |
Target: 5'- -cCGCUACGCGUcCGUG-GCcGCGgccgGCg -3' miRNA: 3'- auGUGGUGUGCA-GCACuCGuCGCa---CG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 85478 | 0.67 | 0.953708 |
Target: 5'- gGC-CCACACGcCGUGGaagggcGCgcaaucaaucaccccAGCGUGCg -3' miRNA: 3'- aUGuGGUGUGCaGCACU------CG---------------UCGCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 6556 | 0.67 | 0.95213 |
Target: 5'- gUACACCACAgGUUGUgcGAGUAGuCGacuacGCg -3' miRNA: 3'- -AUGUGGUGUgCAGCA--CUCGUC-GCa----CG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 146309 | 0.67 | 0.96311 |
Target: 5'- -cUACCGCGCGggcaagggcaaCGcGGGUAGCGUGUu -3' miRNA: 3'- auGUGGUGUGCa----------GCaCUCGUCGCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 91931 | 0.67 | 0.96311 |
Target: 5'- aGCAgaCAgGCGUCG-GAGCAGUGcGUg -3' miRNA: 3'- aUGUg-GUgUGCAGCaCUCGUCGCaCG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 91158 | 0.67 | 0.96311 |
Target: 5'- --aGCCACACGuagUCGUccGAGCcGcCGUGCc -3' miRNA: 3'- augUGGUGUGC---AGCA--CUCGuC-GCACG- -5' |
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30210 | 3' | -54.7 | NC_006273.1 | + | 213885 | 0.67 | 0.956008 |
Target: 5'- aACAgCugGCGUCGUuguguaacaccuGAccGCuGCGUGCg -3' miRNA: 3'- aUGUgGugUGCAGCA------------CU--CGuCGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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