miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 198577 1.04 0.012212
Target:  5'- uUACACCACACGUCGUGAGCAGCGUGa -3'
miRNA:   3'- -AUGUGGUGUGCAGCACUCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 142431 0.78 0.471065
Target:  5'- -cUACCGCGCG-CGUGuGCGcGCGUGCg -3'
miRNA:   3'- auGUGGUGUGCaGCACuCGU-CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 57888 0.77 0.499171
Target:  5'- gGCGCCACACGccCG-GAGCcucgaguucAGCGUGCg -3'
miRNA:   3'- aUGUGGUGUGCa-GCaCUCG---------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 8097 0.76 0.567334
Target:  5'- aACGCCACGCGUCGccagaaaAGCAGCGgGUg -3'
miRNA:   3'- aUGUGGUGUGCAGCac-----UCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 147935 0.75 0.617445
Target:  5'- gACGCCGaugaGCGUCGgcgcggccuaGAGCAGCGUaGCg -3'
miRNA:   3'- aUGUGGUg---UGCAGCa---------CUCGUCGCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 82967 0.75 0.627528
Target:  5'- --gACCACGgGUCGUGAGUAGCa-GCg -3'
miRNA:   3'- augUGGUGUgCAGCACUCGUCGcaCG- -5'
30210 3' -54.7 NC_006273.1 + 157824 0.74 0.687822
Target:  5'- gUGCAUaaagggCACgAUGUCGUGguuAGCGGCGUGCa -3'
miRNA:   3'- -AUGUG------GUG-UGCAGCAC---UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 192875 0.73 0.707649
Target:  5'- aACAgCAgACGUUGUGGGCGGUcgGUGUa -3'
miRNA:   3'- aUGUgGUgUGCAGCACUCGUCG--CACG- -5'
30210 3' -54.7 NC_006273.1 + 16414 0.73 0.717474
Target:  5'- -gUACCGCACGaCGUG-GUAGCGaUGCu -3'
miRNA:   3'- auGUGGUGUGCaGCACuCGUCGC-ACG- -5'
30210 3' -54.7 NC_006273.1 + 142278 0.73 0.727228
Target:  5'- cGCugUGCcgACGUCGUGugGGCGGCGUGg -3'
miRNA:   3'- aUGugGUG--UGCAGCAC--UCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 136092 0.73 0.727228
Target:  5'- gACGCCGaggACGcCGUGGGCGGCGaucGCg -3'
miRNA:   3'- aUGUGGUg--UGCaGCACUCGUCGCa--CG- -5'
30210 3' -54.7 NC_006273.1 + 206836 0.73 0.727228
Target:  5'- cACAuCCACGCGuUCGcGcAGUGGCGUGCu -3'
miRNA:   3'- aUGU-GGUGUGC-AGCaC-UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 135567 0.73 0.736902
Target:  5'- aACAUCAUcaGCGcCGUGcucAGCGGCGUGUa -3'
miRNA:   3'- aUGUGGUG--UGCaGCAC---UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 133719 0.73 0.736902
Target:  5'- aUACGauUCugGCGUUGgccGAGUAGCGUGCc -3'
miRNA:   3'- -AUGU--GGugUGCAGCa--CUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 158353 0.72 0.746488
Target:  5'- aAgGCCGaGCGUCGUucGcGCGGCGUGCg -3'
miRNA:   3'- aUgUGGUgUGCAGCA--CuCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 142799 0.72 0.765358
Target:  5'- aGCAgCCGC-CGUCGcuggUGGGCacgGGCGUGCa -3'
miRNA:   3'- aUGU-GGUGuGCAGC----ACUCG---UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 93105 0.72 0.773704
Target:  5'- cACGCCGCccacacgACGUCGgcacAGCGGgGUGCg -3'
miRNA:   3'- aUGUGGUG-------UGCAGCac--UCGUCgCACG- -5'
30210 3' -54.7 NC_006273.1 + 176281 0.72 0.783769
Target:  5'- aGCGCUACcguGCG-CGUGAGCAGCGc-- -3'
miRNA:   3'- aUGUGGUG---UGCaGCACUCGUCGCacg -5'
30210 3' -54.7 NC_006273.1 + 89568 0.71 0.809507
Target:  5'- cGCACCGCGuuuuucuuggggcCGUCGUGGGUGGCcucGCg -3'
miRNA:   3'- aUGUGGUGU-------------GCAGCACUCGUCGca-CG- -5'
30210 3' -54.7 NC_006273.1 + 77711 0.71 0.818937
Target:  5'- gUGCGCgAcCACGUCGUuauCAGCGUGCu -3'
miRNA:   3'- -AUGUGgU-GUGCAGCAcucGUCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.