miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 208466 0.71 0.818937
Target:  5'- cACACCACGgG-CGUGAGCaucaggAGUGUGg -3'
miRNA:   3'- aUGUGGUGUgCaGCACUCG------UCGCACg -5'
30210 3' -54.7 NC_006273.1 + 103753 0.71 0.826505
Target:  5'- -cCACCACGCGcCGguacucGAGCAaccgcgcGCGUGCc -3'
miRNA:   3'- auGUGGUGUGCaGCa-----CUCGU-------CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 117877 0.71 0.827337
Target:  5'- aGCACCGuCACGg---GGGCAGCG-GCg -3'
miRNA:   3'- aUGUGGU-GUGCagcaCUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 191724 0.71 0.827337
Target:  5'- --aGCCcaauACGCGauUCGUGAGCAGC-UGCg -3'
miRNA:   3'- augUGG----UGUGC--AGCACUCGUCGcACG- -5'
30210 3' -54.7 NC_006273.1 + 5519 0.71 0.835564
Target:  5'- aACACCACGCGgucCGgcucAGCccGCGUGCg -3'
miRNA:   3'- aUGUGGUGUGCa--GCac--UCGu-CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 132863 0.71 0.835564
Target:  5'- gGCGCCGgACGUUGUGAucacuacgguGCAGCGa-- -3'
miRNA:   3'- aUGUGGUgUGCAGCACU----------CGUCGCacg -5'
30210 3' -54.7 NC_006273.1 + 151819 0.7 0.843612
Target:  5'- cGCGCCGCgagGCGUagcgCGUGAGCAG-GUcGCg -3'
miRNA:   3'- aUGUGGUG---UGCA----GCACUCGUCgCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 77002 0.7 0.851473
Target:  5'- gACAag-UAUGUcuagCGUGAGCGGCGUGCg -3'
miRNA:   3'- aUGUgguGUGCA----GCACUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 233165 0.7 0.858383
Target:  5'- cGCGCCACguucaccGCGUCGUGccCAGCGccaugUGCg -3'
miRNA:   3'- aUGUGGUG-------UGCAGCACucGUCGC-----ACG- -5'
30210 3' -54.7 NC_006273.1 + 215181 0.7 0.862153
Target:  5'- cGCACUGCguugucacucGCGUCGUGGcugacggugcuuucuGCAGUGUGUg -3'
miRNA:   3'- aUGUGGUG----------UGCAGCACU---------------CGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 125256 0.7 0.86661
Target:  5'- cUGCACCggGCGCGgCGUcaGAGCgAGCGUGg -3'
miRNA:   3'- -AUGUGG--UGUGCaGCA--CUCG-UCGCACg -5'
30210 3' -54.7 NC_006273.1 + 102226 0.7 0.880928
Target:  5'- gACGCgGCACGUCGagcaaGAGCAGCuucuuaGCa -3'
miRNA:   3'- aUGUGgUGUGCAGCa----CUCGUCGca----CG- -5'
30210 3' -54.7 NC_006273.1 + 205460 0.7 0.883689
Target:  5'- cGCGCCugGCcuUCGUGGGUcgcuucgugaacgagGGCGUGUu -3'
miRNA:   3'- aUGUGGugUGc-AGCACUCG---------------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 123505 0.69 0.887766
Target:  5'- -gUACUGCAgGcUGUGGGUGGCGUGCc -3'
miRNA:   3'- auGUGGUGUgCaGCACUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 62662 0.69 0.887766
Target:  5'- gACGCUuacGCGCG-CGUGuGCGaucGCGUGCu -3'
miRNA:   3'- aUGUGG---UGUGCaGCACuCGU---CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 196752 0.69 0.887766
Target:  5'- cGCACCcCGCGUCGcugcUGA-CGGcCGUGCg -3'
miRNA:   3'- aUGUGGuGUGCAGC----ACUcGUC-GCACG- -5'
30210 3' -54.7 NC_006273.1 + 95165 0.69 0.887766
Target:  5'- aACGCUccaGCACGUCGUGucgacguagaaaAGaCGGCGUGg -3'
miRNA:   3'- aUGUGG---UGUGCAGCAC------------UC-GUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 1860 0.69 0.887766
Target:  5'- cGCACCcCGCGUCGcugcUGA-CGGcCGUGCg -3'
miRNA:   3'- aUGUGGuGUGCAGC----ACUcGUC-GCACG- -5'
30210 3' -54.7 NC_006273.1 + 164516 0.69 0.893735
Target:  5'- cGCGCCaguucgcgaaACACGUUGUugagggaGGGCGGCG-GCg -3'
miRNA:   3'- aUGUGG----------UGUGCAGCA-------CUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 88006 0.69 0.894387
Target:  5'- aGCGCCgACAgGUCGUGcaccucccccccGGCGGCGUcCg -3'
miRNA:   3'- aUGUGG-UGUgCAGCAC------------UCGUCGCAcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.