miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 71868 0.66 0.966343
Target:  5'- -cCACCACAguggaGUCGc-AGguGCGUGCc -3'
miRNA:   3'- auGUGGUGUg----CAGCacUCguCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 131089 0.66 0.966343
Target:  5'- aACACCG-ACGUCGUaaacaucuagccGuGCAGCGUuacGCg -3'
miRNA:   3'- aUGUGGUgUGCAGCA------------CuCGUCGCA---CG- -5'
30210 3' -54.7 NC_006273.1 + 196143 0.66 0.966343
Target:  5'- cGCGCCAUGCGcaaGUGGucGCAGCGcgacGCg -3'
miRNA:   3'- aUGUGGUGUGCag-CACU--CGUCGCa---CG- -5'
30210 3' -54.7 NC_006273.1 + 173115 0.66 0.966343
Target:  5'- cGCGCCgaaacaACACGUa--GGGCaugAGCGUGCa -3'
miRNA:   3'- aUGUGG------UGUGCAgcaCUCG---UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 1250 0.66 0.966343
Target:  5'- cGCGCCAUGCGcaaGUGGucGCAGCGcgacGCg -3'
miRNA:   3'- aUGUGGUGUGCag-CACU--CGUCGCa---CG- -5'
30210 3' -54.7 NC_006273.1 + 196231 0.66 0.965713
Target:  5'- -cCGCCGCagcccggcuuucccgGCGUCGUGAaaggcacggcguaauGCgggcaGGCGUGCg -3'
miRNA:   3'- auGUGGUG---------------UGCAGCACU---------------CG-----UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 76611 0.67 0.96311
Target:  5'- -cCGCUACGCGUcCGUG-GCcGCGgccgGCg -3'
miRNA:   3'- auGUGGUGUGCA-GCACuCGuCGCa---CG- -5'
30210 3' -54.7 NC_006273.1 + 91931 0.67 0.96311
Target:  5'- aGCAgaCAgGCGUCG-GAGCAGUGcGUg -3'
miRNA:   3'- aUGUg-GUgUGCAGCaCUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 91158 0.67 0.96311
Target:  5'- --aGCCACACGuagUCGUccGAGCcGcCGUGCc -3'
miRNA:   3'- augUGGUGUGC---AGCA--CUCGuC-GCACG- -5'
30210 3' -54.7 NC_006273.1 + 146309 0.67 0.96311
Target:  5'- -cUACCGCGCGggcaagggcaaCGcGGGUAGCGUGUu -3'
miRNA:   3'- auGUGGUGUGCa----------GCaCUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 61751 0.67 0.959667
Target:  5'- aGCGCCguGCGCGccuUCGUGGGU-GCGUuGCc -3'
miRNA:   3'- aUGUGG--UGUGC---AGCACUCGuCGCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 168948 0.67 0.959667
Target:  5'- gUGCA-CGCGCGUCagcAGCuGCGUGCu -3'
miRNA:   3'- -AUGUgGUGUGCAGcacUCGuCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 61460 0.67 0.959667
Target:  5'- gGCACgaagaaACGCGcCGUGAGCgccuggugaucGGCGUGg -3'
miRNA:   3'- aUGUGg-----UGUGCaGCACUCG-----------UCGCACg -5'
30210 3' -54.7 NC_006273.1 + 68829 0.67 0.959667
Target:  5'- gGCGCCGCGCGUCaucaaaaaGuGCAGgaacUGUGCa -3'
miRNA:   3'- aUGUGGUGUGCAGca------CuCGUC----GCACG- -5'
30210 3' -54.7 NC_006273.1 + 8283 0.67 0.959667
Target:  5'- aUAC-CCACGcCGcCGUGGGCGGUGauaaccaguUGCu -3'
miRNA:   3'- -AUGuGGUGU-GCaGCACUCGUCGC---------ACG- -5'
30210 3' -54.7 NC_006273.1 + 216206 0.67 0.956008
Target:  5'- gACGCCGCAuuCGUUGUacgGAGC-GCG-GCa -3'
miRNA:   3'- aUGUGGUGU--GCAGCA---CUCGuCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 42046 0.67 0.956008
Target:  5'- gGCGCCcgguuuACGUGUCGgGGGCGGCGguUGCu -3'
miRNA:   3'- aUGUGG------UGUGCAGCaCUCGUCGC--ACG- -5'
30210 3' -54.7 NC_006273.1 + 116838 0.67 0.956008
Target:  5'- cACGCCguucaaACACGUgGcuuUGuGCAGCGUGg -3'
miRNA:   3'- aUGUGG------UGUGCAgC---ACuCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 201648 0.67 0.956008
Target:  5'- cGCGCCAguaUACGUCacGAGUacacGGCGUGUa -3'
miRNA:   3'- aUGUGGU---GUGCAGcaCUCG----UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 213885 0.67 0.956008
Target:  5'- aACAgCugGCGUCGUuguguaacaccuGAccGCuGCGUGCg -3'
miRNA:   3'- aUGUgGugUGCAGCA------------CU--CGuCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.