miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 85478 0.67 0.953708
Target:  5'- gGC-CCACACGcCGUGGaagggcGCgcaaucaaucaccccAGCGUGCg -3'
miRNA:   3'- aUGuGGUGUGCaGCACU------CG---------------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 151241 0.67 0.95213
Target:  5'- cGCGCCGCuccuCGUcugcCGUGAucaaGCGGCGcgGCg -3'
miRNA:   3'- aUGUGGUGu---GCA----GCACU----CGUCGCa-CG- -5'
30210 3' -54.7 NC_006273.1 + 6556 0.67 0.95213
Target:  5'- gUACACCACAgGUUGUgcGAGUAGuCGacuacGCg -3'
miRNA:   3'- -AUGUGGUGUgCAGCA--CUCGUC-GCa----CG- -5'
30210 3' -54.7 NC_006273.1 + 94125 0.67 0.950923
Target:  5'- cGCAUCACcgucaaagccugcuGCGUgGUGAGCcGGUGcUGCg -3'
miRNA:   3'- aUGUGGUG--------------UGCAgCACUCG-UCGC-ACG- -5'
30210 3' -54.7 NC_006273.1 + 111350 0.67 0.948029
Target:  5'- cGCGCCGCugGguuc-AGCGGCGUGa -3'
miRNA:   3'- aUGUGGUGugCagcacUCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 85720 0.68 0.943702
Target:  5'- aACAgCCACcuaACGcCGcGGGCGGCGUGg -3'
miRNA:   3'- aUGU-GGUG---UGCaGCaCUCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 117637 0.68 0.943702
Target:  5'- gGCGCCcC-CGUCGUGGGUuacgaccaguuGGCG-GCa -3'
miRNA:   3'- aUGUGGuGuGCAGCACUCG-----------UCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 118394 0.68 0.943702
Target:  5'- -uCGCCcgACGCGUCGacAGCAGUGcUGCc -3'
miRNA:   3'- auGUGG--UGUGCAGCacUCGUCGC-ACG- -5'
30210 3' -54.7 NC_006273.1 + 197393 0.68 0.939147
Target:  5'- cGCGCCGCGC--UGUGGGCGcGCGaGCc -3'
miRNA:   3'- aUGUGGUGUGcaGCACUCGU-CGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 42729 0.68 0.939147
Target:  5'- cGCGCCACACGgCGacGAGCcgcauAGCGacgGCg -3'
miRNA:   3'- aUGUGGUGUGCaGCa-CUCG-----UCGCa--CG- -5'
30210 3' -54.7 NC_006273.1 + 2500 0.68 0.939147
Target:  5'- cGCGCCGCGC--UGUGGGCGcGCGaGCc -3'
miRNA:   3'- aUGUGGUGUGcaGCACUCGU-CGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 158842 0.68 0.939147
Target:  5'- cGCGCCACGuCcUCGUgcgccgcgccGAGCGGCGacgUGCa -3'
miRNA:   3'- aUGUGGUGU-GcAGCA----------CUCGUCGC---ACG- -5'
30210 3' -54.7 NC_006273.1 + 215020 0.68 0.939147
Target:  5'- cGCAgCgAC-CGUCGUcuGAGCAGUGUGg -3'
miRNA:   3'- aUGU-GgUGuGCAGCA--CUCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 115457 0.68 0.934361
Target:  5'- aGguUCACACGUCGUuAGCcAGCGUcgGCa -3'
miRNA:   3'- aUguGGUGUGCAGCAcUCG-UCGCA--CG- -5'
30210 3' -54.7 NC_006273.1 + 188676 0.68 0.934361
Target:  5'- gUACA--GCACGUC--GAGCuGCGUGCg -3'
miRNA:   3'- -AUGUggUGUGCAGcaCUCGuCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 118796 0.68 0.933869
Target:  5'- -uCGCUGCGCagauaagagguagGUCGUaGuGCGGCGUGCu -3'
miRNA:   3'- auGUGGUGUG-------------CAGCA-CuCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 174200 0.68 0.929343
Target:  5'- gUGCGgCACACuggugGUgGUGGGCAuCGUGCu -3'
miRNA:   3'- -AUGUgGUGUG-----CAgCACUCGUcGCACG- -5'
30210 3' -54.7 NC_006273.1 + 211737 0.68 0.924094
Target:  5'- -uCACCGaaaGCGUCGUGAGCAcGCu--- -3'
miRNA:   3'- auGUGGUg--UGCAGCACUCGU-CGcacg -5'
30210 3' -54.7 NC_006273.1 + 114438 0.68 0.918612
Target:  5'- gACGCCcCGCGUCaccGGCGGCG-GCg -3'
miRNA:   3'- aUGUGGuGUGCAGcacUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 33414 0.68 0.918612
Target:  5'- cGCACCGCcuCGggCGUcGGCGGCGcGCg -3'
miRNA:   3'- aUGUGGUGu-GCa-GCAcUCGUCGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.