miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 743 0.69 0.894387
Target:  5'- aGCGCCauACACGUCGcUGccuauaaaagccAGguGCGUGUc -3'
miRNA:   3'- aUGUGG--UGUGCAGC-AC------------UCguCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 1250 0.66 0.966343
Target:  5'- cGCGCCAUGCGcaaGUGGucGCAGCGcgacGCg -3'
miRNA:   3'- aUGUGGUGUGCag-CACU--CGUCGCa---CG- -5'
30210 3' -54.7 NC_006273.1 + 1860 0.69 0.887766
Target:  5'- cGCACCcCGCGUCGcugcUGA-CGGcCGUGCg -3'
miRNA:   3'- aUGUGGuGUGCAGC----ACUcGUC-GCACG- -5'
30210 3' -54.7 NC_006273.1 + 2500 0.68 0.939147
Target:  5'- cGCGCCGCGC--UGUGGGCGcGCGaGCc -3'
miRNA:   3'- aUGUGGUGUGcaGCACUCGU-CGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 5519 0.71 0.835564
Target:  5'- aACACCACGCGgucCGgcucAGCccGCGUGCg -3'
miRNA:   3'- aUGUGGUGUGCa--GCac--UCGu-CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 6556 0.67 0.95213
Target:  5'- gUACACCACAgGUUGUgcGAGUAGuCGacuacGCg -3'
miRNA:   3'- -AUGUGGUGUgCAGCA--CUCGUC-GCa----CG- -5'
30210 3' -54.7 NC_006273.1 + 8097 0.76 0.567334
Target:  5'- aACGCCACGCGUCGccagaaaAGCAGCGgGUg -3'
miRNA:   3'- aUGUGGUGUGCAGCac-----UCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 8283 0.67 0.959667
Target:  5'- aUAC-CCACGcCGcCGUGGGCGGUGauaaccaguUGCu -3'
miRNA:   3'- -AUGuGGUGU-GCaGCACUCGUCGC---------ACG- -5'
30210 3' -54.7 NC_006273.1 + 9164 0.66 0.969371
Target:  5'- cACACCu--CGUCG-GA-CAGCGUGUc -3'
miRNA:   3'- aUGUGGuguGCAGCaCUcGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 16414 0.73 0.717474
Target:  5'- -gUACCGCACGaCGUG-GUAGCGaUGCu -3'
miRNA:   3'- auGUGGUGUGCaGCACuCGUCGC-ACG- -5'
30210 3' -54.7 NC_006273.1 + 21459 0.69 0.906956
Target:  5'- -cCGCCAC-CGUCGcccuCAGCGUGCu -3'
miRNA:   3'- auGUGGUGuGCAGCacucGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 27043 0.69 0.912899
Target:  5'- aGCACCAcCGCGaCGUuccaGAGCAGgGUuGCu -3'
miRNA:   3'- aUGUGGU-GUGCaGCA----CUCGUCgCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 33414 0.68 0.918612
Target:  5'- cGCACCGCcuCGggCGUcGGCGGCGcGCg -3'
miRNA:   3'- aUGUGGUGu-GCa-GCAcUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 34385 0.69 0.906956
Target:  5'- -uCGCCAC-CGUugaCGUGGGCGGCGaUGa -3'
miRNA:   3'- auGUGGUGuGCA---GCACUCGUCGC-ACg -5'
30210 3' -54.7 NC_006273.1 + 37153 0.66 0.974835
Target:  5'- cGCACgCACAgGUCGgccaAGUcgcGCGUGCa -3'
miRNA:   3'- aUGUG-GUGUgCAGCac--UCGu--CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 42046 0.67 0.956008
Target:  5'- gGCGCCcgguuuACGUGUCGgGGGCGGCGguUGCu -3'
miRNA:   3'- aUGUGG------UGUGCAGCaCUCGUCGC--ACG- -5'
30210 3' -54.7 NC_006273.1 + 42729 0.68 0.939147
Target:  5'- cGCGCCACACGgCGacGAGCcgcauAGCGacgGCg -3'
miRNA:   3'- aUGUGGUGUGCaGCa-CUCG-----UCGCa--CG- -5'
30210 3' -54.7 NC_006273.1 + 57888 0.77 0.499171
Target:  5'- gGCGCCACACGccCG-GAGCcucgaguucAGCGUGCg -3'
miRNA:   3'- aUGUGGUGUGCa-GCaCUCG---------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 61460 0.67 0.959667
Target:  5'- gGCACgaagaaACGCGcCGUGAGCgccuggugaucGGCGUGg -3'
miRNA:   3'- aUGUGg-----UGUGCaGCACUCG-----------UCGCACg -5'
30210 3' -54.7 NC_006273.1 + 61751 0.67 0.959667
Target:  5'- aGCGCCguGCGCGccuUCGUGGGU-GCGUuGCc -3'
miRNA:   3'- aUGUGG--UGUGC---AGCACUCGuCGCA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.