miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 62662 0.69 0.887766
Target:  5'- gACGCUuacGCGCG-CGUGuGCGaucGCGUGCu -3'
miRNA:   3'- aUGUGG---UGUGCaGCACuCGU---CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 68829 0.67 0.959667
Target:  5'- gGCGCCGCGCGUCaucaaaaaGuGCAGgaacUGUGCa -3'
miRNA:   3'- aUGUGGUGUGCAGca------CuCGUC----GCACG- -5'
30210 3' -54.7 NC_006273.1 + 69425 0.69 0.896972
Target:  5'- cACGCUACAauacgucaaucacaGUUGUGAuuaCAGCGUGCg -3'
miRNA:   3'- aUGUGGUGUg-------------CAGCACUc--GUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 70327 0.66 0.974835
Target:  5'- cGCGCCGUGCGUcugccCGUGAGCAcCGcUGCc -3'
miRNA:   3'- aUGUGGUGUGCA-----GCACUCGUcGC-ACG- -5'
30210 3' -54.7 NC_006273.1 + 70936 0.66 0.977283
Target:  5'- gACGCCugGgCG-CGac-GCGGCGUGCu -3'
miRNA:   3'- aUGUGGugU-GCaGCacuCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 71868 0.66 0.966343
Target:  5'- -cCACCACAguggaGUCGc-AGguGCGUGCc -3'
miRNA:   3'- auGUGGUGUg----CAGCacUCguCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 76611 0.67 0.96311
Target:  5'- -cCGCUACGCGUcCGUG-GCcGCGgccgGCg -3'
miRNA:   3'- auGUGGUGUGCA-GCACuCGuCGCa---CG- -5'
30210 3' -54.7 NC_006273.1 + 77002 0.7 0.851473
Target:  5'- gACAag-UAUGUcuagCGUGAGCGGCGUGCg -3'
miRNA:   3'- aUGUgguGUGCA----GCACUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 77711 0.71 0.818937
Target:  5'- gUGCGCgAcCACGUCGUuauCAGCGUGCu -3'
miRNA:   3'- -AUGUGgU-GUGCAGCAcucGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 82967 0.75 0.627528
Target:  5'- --gACCACGgGUCGUGAGUAGCa-GCg -3'
miRNA:   3'- augUGGUGUgCAGCACUCGUCGcaCG- -5'
30210 3' -54.7 NC_006273.1 + 85478 0.67 0.953708
Target:  5'- gGC-CCACACGcCGUGGaagggcGCgcaaucaaucaccccAGCGUGCg -3'
miRNA:   3'- aUGuGGUGUGCaGCACU------CG---------------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 85720 0.68 0.943702
Target:  5'- aACAgCCACcuaACGcCGcGGGCGGCGUGg -3'
miRNA:   3'- aUGU-GGUG---UGCaGCaCUCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 87779 0.69 0.906349
Target:  5'- cGC-CCGgacgugcucaaacCGCGUCGUGAGCcGCG-GCg -3'
miRNA:   3'- aUGuGGU-------------GUGCAGCACUCGuCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 88006 0.69 0.894387
Target:  5'- aGCGCCgACAgGUCGUGcaccucccccccGGCGGCGUcCg -3'
miRNA:   3'- aUGUGG-UGUgCAGCAC------------UCGUCGCAcG- -5'
30210 3' -54.7 NC_006273.1 + 89568 0.71 0.809507
Target:  5'- cGCACCGCGuuuuucuuggggcCGUCGUGGGUGGCcucGCg -3'
miRNA:   3'- aUGUGGUGU-------------GCAGCACUCGUCGca-CG- -5'
30210 3' -54.7 NC_006273.1 + 90523 0.69 0.912315
Target:  5'- aGCGCC--GCGUCGUGcgaaAGCAgaaacucGCGUGCc -3'
miRNA:   3'- aUGUGGugUGCAGCAC----UCGU-------CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 91158 0.67 0.96311
Target:  5'- --aGCCACACGuagUCGUccGAGCcGcCGUGCc -3'
miRNA:   3'- augUGGUGUGC---AGCA--CUCGuC-GCACG- -5'
30210 3' -54.7 NC_006273.1 + 91931 0.67 0.96311
Target:  5'- aGCAgaCAgGCGUCG-GAGCAGUGcGUg -3'
miRNA:   3'- aUGUg-GUgUGCAGCaCUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 93105 0.72 0.773704
Target:  5'- cACGCCGCccacacgACGUCGgcacAGCGGgGUGCg -3'
miRNA:   3'- aUGUGGUG-------UGCAGCac--UCGUCgCACG- -5'
30210 3' -54.7 NC_006273.1 + 94125 0.67 0.950923
Target:  5'- cGCAUCACcgucaaagccugcuGCGUgGUGAGCcGGUGcUGCg -3'
miRNA:   3'- aUGUGGUG--------------UGCAgCACUCG-UCGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.