miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 233165 0.7 0.858383
Target:  5'- cGCGCCACguucaccGCGUCGUGccCAGCGccaugUGCg -3'
miRNA:   3'- aUGUGGUG-------UGCAGCACucGUCGC-----ACG- -5'
30210 3' -54.7 NC_006273.1 + 218972 0.66 0.977283
Target:  5'- aGCAUCGCuaccACGUCGUGcGGUAcccGCGUaGCa -3'
miRNA:   3'- aUGUGGUG----UGCAGCAC-UCGU---CGCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 216383 0.69 0.912899
Target:  5'- uUGCAgCGCGCc-CGUGGGCAGUagguccGUGCg -3'
miRNA:   3'- -AUGUgGUGUGcaGCACUCGUCG------CACG- -5'
30210 3' -54.7 NC_006273.1 + 216206 0.67 0.956008
Target:  5'- gACGCCGCAuuCGUUGUacgGAGC-GCG-GCa -3'
miRNA:   3'- aUGUGGUGU--GCAGCA---CUCGuCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 215181 0.7 0.862153
Target:  5'- cGCACUGCguugucacucGCGUCGUGGcugacggugcuuucuGCAGUGUGUg -3'
miRNA:   3'- aUGUGGUG----------UGCAGCACU---------------CGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 215020 0.68 0.939147
Target:  5'- cGCAgCgAC-CGUCGUcuGAGCAGUGUGg -3'
miRNA:   3'- aUGU-GgUGuGCAGCA--CUCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 213885 0.67 0.956008
Target:  5'- aACAgCugGCGUCGUuguguaacaccuGAccGCuGCGUGCg -3'
miRNA:   3'- aUGUgGugUGCAGCA------------CU--CGuCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 211737 0.68 0.924094
Target:  5'- -uCACCGaaaGCGUCGUGAGCAcGCu--- -3'
miRNA:   3'- auGUGGUg--UGCAGCACUCGU-CGcacg -5'
30210 3' -54.7 NC_006273.1 + 209724 0.66 0.9722
Target:  5'- uUACgAUCAacgGCGgcaCGUGaAGCAGCGUGUa -3'
miRNA:   3'- -AUG-UGGUg--UGCa--GCAC-UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 208466 0.71 0.818937
Target:  5'- cACACCACGgG-CGUGAGCaucaggAGUGUGg -3'
miRNA:   3'- aUGUGGUGUgCaGCACUCG------UCGCACg -5'
30210 3' -54.7 NC_006273.1 + 206836 0.73 0.727228
Target:  5'- cACAuCCACGCGuUCGcGcAGUGGCGUGCu -3'
miRNA:   3'- aUGU-GGUGUGC-AGCaC-UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 205460 0.7 0.883689
Target:  5'- cGCGCCugGCcuUCGUGGGUcgcuucgugaacgagGGCGUGUu -3'
miRNA:   3'- aUGUGGugUGc-AGCACUCG---------------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 204630 0.66 0.9722
Target:  5'- -cCGCCGCcgGCGcCGUucucGGGCAGCGaggGCa -3'
miRNA:   3'- auGUGGUG--UGCaGCA----CUCGUCGCa--CG- -5'
30210 3' -54.7 NC_006273.1 + 203916 0.66 0.9722
Target:  5'- cGCGCCGCGCGagguguaGUGGGCGGUa--- -3'
miRNA:   3'- aUGUGGUGUGCag-----CACUCGUCGcacg -5'
30210 3' -54.7 NC_006273.1 + 202547 0.69 0.906956
Target:  5'- gGgACCGCAgCGUggccggCGUGgcggccgacGGCAGCGUGCu -3'
miRNA:   3'- aUgUGGUGU-GCA------GCAC---------UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 201648 0.67 0.956008
Target:  5'- cGCGCCAguaUACGUCacGAGUacacGGCGUGUa -3'
miRNA:   3'- aUGUGGU---GUGCAGcaCUCG----UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 199994 0.66 0.977283
Target:  5'- gAgGCCAacaAUuUCGUGAuCGGCGUGCu -3'
miRNA:   3'- aUgUGGUg--UGcAGCACUcGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 198577 1.04 0.012212
Target:  5'- uUACACCACACGUCGUGAGCAGCGUGa -3'
miRNA:   3'- -AUGUGGUGUGCAGCACUCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 197393 0.68 0.939147
Target:  5'- cGCGCCGCGC--UGUGGGCGcGCGaGCc -3'
miRNA:   3'- aUGUGGUGUGcaGCACUCGU-CGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 196752 0.69 0.887766
Target:  5'- cGCACCcCGCGUCGcugcUGA-CGGcCGUGCg -3'
miRNA:   3'- aUGUGGuGUGCAGC----ACUcGUC-GCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.