miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 88006 0.69 0.894387
Target:  5'- aGCGCCgACAgGUCGUGcaccucccccccGGCGGCGUcCg -3'
miRNA:   3'- aUGUGG-UGUgCAGCAC------------UCGUCGCAcG- -5'
30210 3' -54.7 NC_006273.1 + 117877 0.71 0.827337
Target:  5'- aGCACCGuCACGg---GGGCAGCG-GCg -3'
miRNA:   3'- aUGUGGU-GUGCagcaCUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 132863 0.71 0.835564
Target:  5'- gGCGCCGgACGUUGUGAucacuacgguGCAGCGa-- -3'
miRNA:   3'- aUGUGGUgUGCAGCACU----------CGUCGCacg -5'
30210 3' -54.7 NC_006273.1 + 151819 0.7 0.843612
Target:  5'- cGCGCCGCgagGCGUagcgCGUGAGCAG-GUcGCg -3'
miRNA:   3'- aUGUGGUG---UGCA----GCACUCGUCgCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 77002 0.7 0.851473
Target:  5'- gACAag-UAUGUcuagCGUGAGCGGCGUGCg -3'
miRNA:   3'- aUGUgguGUGCA----GCACUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 125256 0.7 0.86661
Target:  5'- cUGCACCggGCGCGgCGUcaGAGCgAGCGUGg -3'
miRNA:   3'- -AUGUGG--UGUGCaGCA--CUCG-UCGCACg -5'
30210 3' -54.7 NC_006273.1 + 62662 0.69 0.887766
Target:  5'- gACGCUuacGCGCG-CGUGuGCGaucGCGUGCu -3'
miRNA:   3'- aUGUGG---UGUGCaGCACuCGU---CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 196752 0.69 0.887766
Target:  5'- cGCACCcCGCGUCGcugcUGA-CGGcCGUGCg -3'
miRNA:   3'- aUGUGGuGUGCAGC----ACUcGUC-GCACG- -5'
30210 3' -54.7 NC_006273.1 + 164516 0.69 0.893735
Target:  5'- cGCGCCaguucgcgaaACACGUUGUugagggaGGGCGGCG-GCg -3'
miRNA:   3'- aUGUGG----------UGUGCAGCA-------CUCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 103753 0.71 0.826505
Target:  5'- -cCACCACGCGcCGguacucGAGCAaccgcgcGCGUGCc -3'
miRNA:   3'- auGUGGUGUGCaGCa-----CUCGU-------CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 208466 0.71 0.818937
Target:  5'- cACACCACGgG-CGUGAGCaucaggAGUGUGg -3'
miRNA:   3'- aUGUGGUGUgCaGCACUCG------UCGCACg -5'
30210 3' -54.7 NC_006273.1 + 77711 0.71 0.818937
Target:  5'- gUGCGCgAcCACGUCGUuauCAGCGUGCu -3'
miRNA:   3'- -AUGUGgU-GUGCAGCAcucGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 147935 0.75 0.617445
Target:  5'- gACGCCGaugaGCGUCGgcgcggccuaGAGCAGCGUaGCg -3'
miRNA:   3'- aUGUGGUg---UGCAGCa---------CUCGUCGCA-CG- -5'
30210 3' -54.7 NC_006273.1 + 82967 0.75 0.627528
Target:  5'- --gACCACGgGUCGUGAGUAGCa-GCg -3'
miRNA:   3'- augUGGUGUgCAGCACUCGUCGcaCG- -5'
30210 3' -54.7 NC_006273.1 + 192875 0.73 0.707649
Target:  5'- aACAgCAgACGUUGUGGGCGGUcgGUGUa -3'
miRNA:   3'- aUGUgGUgUGCAGCACUCGUCG--CACG- -5'
30210 3' -54.7 NC_006273.1 + 136092 0.73 0.727228
Target:  5'- gACGCCGaggACGcCGUGGGCGGCGaucGCg -3'
miRNA:   3'- aUGUGGUg--UGCaGCACUCGUCGCa--CG- -5'
30210 3' -54.7 NC_006273.1 + 142278 0.73 0.727228
Target:  5'- cGCugUGCcgACGUCGUGugGGCGGCGUGg -3'
miRNA:   3'- aUGugGUG--UGCAGCAC--UCGUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 133719 0.73 0.736902
Target:  5'- aUACGauUCugGCGUUGgccGAGUAGCGUGCc -3'
miRNA:   3'- -AUGU--GGugUGCAGCa--CUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 135567 0.73 0.736902
Target:  5'- aACAUCAUcaGCGcCGUGcucAGCGGCGUGUa -3'
miRNA:   3'- aUGUGGUG--UGCaGCAC---UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 142799 0.72 0.765358
Target:  5'- aGCAgCCGC-CGUCGcuggUGGGCacgGGCGUGCa -3'
miRNA:   3'- aUGU-GGUGuGCAGC----ACUCG---UCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.