miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 3' -54.7 NC_006273.1 + 142431 0.78 0.471065
Target:  5'- -cUACCGCGCG-CGUGuGCGcGCGUGCg -3'
miRNA:   3'- auGUGGUGUGCaGCACuCGU-CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 1860 0.69 0.887766
Target:  5'- cGCACCcCGCGUCGcugcUGA-CGGcCGUGCg -3'
miRNA:   3'- aUGUGGuGUGCAGC----ACUcGUC-GCACG- -5'
30210 3' -54.7 NC_006273.1 + 178940 0.69 0.894387
Target:  5'- aACACCAagaagcaaaagUGCGgcuagagCGUGGGCcGCGUGCc -3'
miRNA:   3'- aUGUGGU-----------GUGCa------GCACUCGuCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 199994 0.66 0.977283
Target:  5'- gAgGCCAacaAUuUCGUGAuCGGCGUGCu -3'
miRNA:   3'- aUgUGGUg--UGcAGCACUcGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 16414 0.73 0.717474
Target:  5'- -gUACCGCACGaCGUG-GUAGCGaUGCu -3'
miRNA:   3'- auGUGGUGUGCaGCACuCGUCGC-ACG- -5'
30210 3' -54.7 NC_006273.1 + 206836 0.73 0.727228
Target:  5'- cACAuCCACGCGuUCGcGcAGUGGCGUGCu -3'
miRNA:   3'- aUGU-GGUGUGC-AGCaC-UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 93105 0.72 0.773704
Target:  5'- cACGCCGCccacacgACGUCGgcacAGCGGgGUGCg -3'
miRNA:   3'- aUGUGGUG-------UGCAGCac--UCGUCgCACG- -5'
30210 3' -54.7 NC_006273.1 + 176281 0.72 0.783769
Target:  5'- aGCGCUACcguGCG-CGUGAGCAGCGc-- -3'
miRNA:   3'- aUGUGGUG---UGCaGCACUCGUCGCacg -5'
30210 3' -54.7 NC_006273.1 + 5519 0.71 0.835564
Target:  5'- aACACCACGCGgucCGgcucAGCccGCGUGCg -3'
miRNA:   3'- aUGUGGUGUGCa--GCac--UCGu-CGCACG- -5'
30210 3' -54.7 NC_006273.1 + 123505 0.69 0.887766
Target:  5'- -gUACUGCAgGcUGUGGGUGGCGUGCc -3'
miRNA:   3'- auGUGGUGUgCaGCACUCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 215181 0.7 0.862153
Target:  5'- cGCACUGCguugucacucGCGUCGUGGcugacggugcuuucuGCAGUGUGUg -3'
miRNA:   3'- aUGUGGUG----------UGCAGCACU---------------CGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 191724 0.71 0.827337
Target:  5'- --aGCCcaauACGCGauUCGUGAGCAGC-UGCg -3'
miRNA:   3'- augUGG----UGUGC--AGCACUCGUCGcACG- -5'
30210 3' -54.7 NC_006273.1 + 57888 0.77 0.499171
Target:  5'- gGCGCCACACGccCG-GAGCcucgaguucAGCGUGCg -3'
miRNA:   3'- aUGUGGUGUGCa-GCaCUCG---------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 102226 0.7 0.880928
Target:  5'- gACGCgGCACGUCGagcaaGAGCAGCuucuuaGCa -3'
miRNA:   3'- aUGUGgUGUGCAGCa----CUCGUCGca----CG- -5'
30210 3' -54.7 NC_006273.1 + 8097 0.76 0.567334
Target:  5'- aACGCCACGCGUCGccagaaaAGCAGCGgGUg -3'
miRNA:   3'- aUGUGGUGUGCAGCac-----UCGUCGCaCG- -5'
30210 3' -54.7 NC_006273.1 + 89568 0.71 0.809507
Target:  5'- cGCACCGCGuuuuucuuggggcCGUCGUGGGUGGCcucGCg -3'
miRNA:   3'- aUGUGGUGU-------------GCAGCACUCGUCGca-CG- -5'
30210 3' -54.7 NC_006273.1 + 205460 0.7 0.883689
Target:  5'- cGCGCCugGCcuUCGUGGGUcgcuucgugaacgagGGCGUGUu -3'
miRNA:   3'- aUGUGGugUGc-AGCACUCG---------------UCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 95165 0.69 0.887766
Target:  5'- aACGCUccaGCACGUCGUGucgacguagaaaAGaCGGCGUGg -3'
miRNA:   3'- aUGUGG---UGUGCAGCAC------------UC-GUCGCACg -5'
30210 3' -54.7 NC_006273.1 + 157824 0.74 0.687822
Target:  5'- gUGCAUaaagggCACgAUGUCGUGguuAGCGGCGUGCa -3'
miRNA:   3'- -AUGUG------GUG-UGCAGCAC---UCGUCGCACG- -5'
30210 3' -54.7 NC_006273.1 + 158353 0.72 0.746488
Target:  5'- aAgGCCGaGCGUCGUucGcGCGGCGUGCg -3'
miRNA:   3'- aUgUGGUgUGCAGCA--CuCGUCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.