Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30210 | 5' | -61.6 | NC_006273.1 | + | 142806 | 0.66 | 0.76655 |
Target: 5'- gCCGUCGCuggUGGGCacgGGCGUGCaccgCGGu -3' miRNA: 3'- -GGCGGUG---ACCCGgagCCGCACGa---GUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 200833 | 0.66 | 0.800929 |
Target: 5'- cUCGCUGuCUGGGCCgcgcuucgaGGCGUGCc--- -3' miRNA: 3'- -GGCGGU-GACCCGGag-------CCGCACGaguc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 29934 | 0.66 | 0.783978 |
Target: 5'- cUCGCCuagACUuugcGGGCCUCGGCuugGCUaCAc -3' miRNA: 3'- -GGCGG---UGA----CCCGGAGCCGca-CGA-GUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 141070 | 0.66 | 0.792517 |
Target: 5'- aCCGgCGCcGGGCCUCGGCcGgggagGgUgGGg -3' miRNA: 3'- -GGCgGUGaCCCGGAGCCG-Ca----CgAgUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 99293 | 0.66 | 0.775319 |
Target: 5'- aUCGCCGCccacGGcGuCCUCGGCGUcgUCGGa -3' miRNA: 3'- -GGCGGUGa---CC-C-GGAGCCGCAcgAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 163440 | 0.66 | 0.775319 |
Target: 5'- -aGCCguGCUGGGCCUCaacGCG-GCUUg- -3' miRNA: 3'- ggCGG--UGACCCGGAGc--CGCaCGAGuc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 23619 | 0.66 | 0.757676 |
Target: 5'- gCCGCCGagcccGGGCCUgcucaccauuuaUaGCGUGCUCAc -3' miRNA: 3'- -GGCGGUga---CCCGGA------------GcCGCACGAGUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 193979 | 0.66 | 0.783978 |
Target: 5'- cUCGCC-CUGGGCUccgaCGGCGccguUGCcCGGg -3' miRNA: 3'- -GGCGGuGACCCGGa---GCCGC----ACGaGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 197181 | 0.66 | 0.757676 |
Target: 5'- uCCGCCGuCUccggaugaGcGGCCgCGGCGcggGCUCGGc -3' miRNA: 3'- -GGCGGU-GA--------C-CCGGaGCCGCa--CGAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 73730 | 0.66 | 0.783978 |
Target: 5'- cCCGCCGCcaUGGGUggCGGCGgcgGC-CGa -3' miRNA: 3'- -GGCGGUG--ACCCGgaGCCGCa--CGaGUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 70381 | 0.66 | 0.775319 |
Target: 5'- aCCGCCcuagacuacgcGCUGGGCUccuggcuuuUCGGCauacccguGUGuCUCGGc -3' miRNA: 3'- -GGCGG-----------UGACCCGG---------AGCCG--------CAC-GAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 13200 | 0.66 | 0.792517 |
Target: 5'- cCCGCUAC-GGGCCcgugCGGCGUuacaGCgUCuGg -3' miRNA: 3'- -GGCGGUGaCCCGGa---GCCGCA----CG-AGuC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 101567 | 0.66 | 0.800929 |
Target: 5'- gCGCgAC-GGGCg-CGGCGUucgcgcucGCUCAGg -3' miRNA: 3'- gGCGgUGaCCCGgaGCCGCA--------CGAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 94239 | 0.66 | 0.775319 |
Target: 5'- uCCGCgGCaGGGUUcCGGCcGUGCUgCGGu -3' miRNA: 3'- -GGCGgUGaCCCGGaGCCG-CACGA-GUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 139712 | 0.67 | 0.739646 |
Target: 5'- gUCGUCcCUGuGGugucgucuuCCUCGGCGUcagGCUCAGa -3' miRNA: 3'- -GGCGGuGAC-CC---------GGAGCCGCA---CGAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 33417 | 0.67 | 0.730504 |
Target: 5'- aCCGCCuc-GGGCgUCGGCG-GCgcgCGa -3' miRNA: 3'- -GGCGGugaCCCGgAGCCGCaCGa--GUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 70937 | 0.67 | 0.721288 |
Target: 5'- aCGCC--UGGGCgCgacgCGGCGUGCUg-- -3' miRNA: 3'- gGCGGugACCCG-Ga---GCCGCACGAguc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 83402 | 0.67 | 0.702664 |
Target: 5'- gCCGCCACccGGCC-CGGCG-GCgcccgagCGGg -3' miRNA: 3'- -GGCGGUGacCCGGaGCCGCaCGa------GUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 21706 | 0.67 | 0.748706 |
Target: 5'- gUCGCCGCa-GGCCuuugUCGGCGcgGCUCu- -3' miRNA: 3'- -GGCGGUGacCCGG----AGCCGCa-CGAGuc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 160563 | 0.67 | 0.721288 |
Target: 5'- cCCGCgGCUGGuaCgagCGGUGgGCUCGa -3' miRNA: 3'- -GGCGgUGACCcgGa--GCCGCaCGAGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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