miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 5' -61.6 NC_006273.1 + 198610 1.1 0.001307
Target:  5'- gCCGCCACUGGGCCUCGGCGUGCUCAGg -3'
miRNA:   3'- -GGCGGUGACCCGGAGCCGCACGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 131256 0.8 0.140825
Target:  5'- aUCGCCGCgucGGGUCUCGGCGUGCgcgCGc -3'
miRNA:   3'- -GGCGGUGa--CCCGGAGCCGCACGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 47840 0.79 0.166443
Target:  5'- gUCGUCGCUGGGCCUCGGCGccGUaCGGc -3'
miRNA:   3'- -GGCGGUGACCCGGAGCCGCa-CGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 111351 0.75 0.287951
Target:  5'- gCGCCGCUGGGUUcagCGGCGUGaucCAGg -3'
miRNA:   3'- gGCGGUGACCCGGa--GCCGCACga-GUC- -5'
30210 5' -61.6 NC_006273.1 + 38084 0.73 0.378767
Target:  5'- gCCGCCGC-GcGGCCUCGGCG-GCgggCGc -3'
miRNA:   3'- -GGCGGUGaC-CCGGAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 232977 0.73 0.378767
Target:  5'- gCCGCCGC-GcGGCCUCGGCG-GCgggCGc -3'
miRNA:   3'- -GGCGGUGaC-CCGGAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 21458 0.73 0.402281
Target:  5'- aCCGCCACcgucGcCCUCaGCGUGCUCAGc -3'
miRNA:   3'- -GGCGGUGacc-C-GGAGcCGCACGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 91203 0.73 0.402281
Target:  5'- uCgGCCACgcgcuccaGGGCCUCGGCGauCUCGGc -3'
miRNA:   3'- -GgCGGUGa-------CCCGGAGCCGCacGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 123083 0.73 0.410323
Target:  5'- aCGCCACUGGGUCggcUGGCGc-CUCGGu -3'
miRNA:   3'- gGCGGUGACCCGGa--GCCGCacGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 187888 0.72 0.443462
Target:  5'- aUCGa-GCUGGGCCUCGcGCG-GCUCGc -3'
miRNA:   3'- -GGCggUGACCCGGAGC-CGCaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 65109 0.72 0.460586
Target:  5'- gUGCuCAC-GGGCUUCGGCGUGCa--- -3'
miRNA:   3'- gGCG-GUGaCCCGGAGCCGCACGaguc -5'
30210 5' -61.6 NC_006273.1 + 151987 0.71 0.469279
Target:  5'- gCGCCGCcGGGCCgggUGGCG-GCggCAGc -3'
miRNA:   3'- gGCGGUGaCCCGGa--GCCGCaCGa-GUC- -5'
30210 5' -61.6 NC_006273.1 + 144610 0.71 0.481587
Target:  5'- -gGCUGCUGGGCgcuUccauggaccugugcuUCGGCGUGCUCAa -3'
miRNA:   3'- ggCGGUGACCCG---G---------------AGCCGCACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 42212 0.71 0.513925
Target:  5'- gCCGCCgaacgggcaGCgUGGGCUUCGGCG-GC-CGGu -3'
miRNA:   3'- -GGCGG---------UG-ACCCGGAGCCGCaCGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 207591 0.71 0.513925
Target:  5'- gCUGCUACUGGGUCUuuucauuuucuuUGGUGUGUUCu- -3'
miRNA:   3'- -GGCGGUGACCCGGA------------GCCGCACGAGuc -5'
30210 5' -61.6 NC_006273.1 + 202155 0.71 0.513925
Target:  5'- gUCGCCGCcccgGGGcCCUCGGUGcGCUacCGGg -3'
miRNA:   3'- -GGCGGUGa---CCC-GGAGCCGCaCGA--GUC- -5'
30210 5' -61.6 NC_006273.1 + 87415 0.7 0.52215
Target:  5'- gCCGCCGCcGGcuccuccGCCUCgGGCGacggggGCUCGGa -3'
miRNA:   3'- -GGCGGUGaCC-------CGGAG-CCGCa-----CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 67230 0.7 0.532271
Target:  5'- aCCgGCUGCUGG-CCUaCGGCGUGCUg-- -3'
miRNA:   3'- -GG-CGGUGACCcGGA-GCCGCACGAguc -5'
30210 5' -61.6 NC_006273.1 + 147470 0.7 0.560209
Target:  5'- uCCGUCGCgGGcaacuccauuuGCUUCGGCGUGCcCGGc -3'
miRNA:   3'- -GGCGGUGaCC-----------CGGAGCCGCACGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 197303 0.7 0.560209
Target:  5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3'
miRNA:   3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.