miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 5' -61.6 NC_006273.1 + 52362 0.67 0.721288
Target:  5'- gUCGCCACUcGGCCUCGuccaGCaG-GCUCAu -3'
miRNA:   3'- -GGCGGUGAcCCGGAGC----CG-CaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 160563 0.67 0.721288
Target:  5'- cCCGCgGCUGGuaCgagCGGUGgGCUCGa -3'
miRNA:   3'- -GGCGgUGACCcgGa--GCCGCaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 70937 0.67 0.721288
Target:  5'- aCGCC--UGGGCgCgacgCGGCGUGCUg-- -3'
miRNA:   3'- gGCGGugACCCG-Ga---GCCGCACGAguc -5'
30210 5' -61.6 NC_006273.1 + 44788 0.67 0.721288
Target:  5'- aUCGCCGCggccgaugGGcGCCggCGGaCGUGaCUCGGc -3'
miRNA:   3'- -GGCGGUGa-------CC-CGGa-GCC-GCAC-GAGUC- -5'
30210 5' -61.6 NC_006273.1 + 211048 0.67 0.712005
Target:  5'- uCUGUCGCUGGGUCgCGGUGggaaaGCgCAGa -3'
miRNA:   3'- -GGCGGUGACCCGGaGCCGCa----CGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 83402 0.67 0.702664
Target:  5'- gCCGCCACccGGCC-CGGCG-GCgcccgagCGGg -3'
miRNA:   3'- -GGCGGUGacCCGGaGCCGCaCGa------GUC- -5'
30210 5' -61.6 NC_006273.1 + 206581 0.68 0.69327
Target:  5'- gUGCgGCUaGGGCCcCGGCGUaGUUUGGa -3'
miRNA:   3'- gGCGgUGA-CCCGGaGCCGCA-CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 144565 0.68 0.69327
Target:  5'- -aGCCGgUGcgcgacGGCCUCGGUcUGCUCAu -3'
miRNA:   3'- ggCGGUgAC------CCGGAGCCGcACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 84843 0.68 0.683832
Target:  5'- -gGCCcgUGGGCCUgGGCcugcuagacGUGCUCAa -3'
miRNA:   3'- ggCGGugACCCGGAgCCG---------CACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 60247 0.68 0.683832
Target:  5'- aCCGCgACUGGGCa-CGGCGggaccGCUg-- -3'
miRNA:   3'- -GGCGgUGACCCGgaGCCGCa----CGAguc -5'
30210 5' -61.6 NC_006273.1 + 160211 0.68 0.674356
Target:  5'- gUGCCACUGGGUguaCUCGGU--GCUcCAGc -3'
miRNA:   3'- gGCGGUGACCCG---GAGCCGcaCGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 150547 0.68 0.674356
Target:  5'- gCCGCCGC-GGccGUCUCGG-GUGCcuUCAGg -3'
miRNA:   3'- -GGCGGUGaCC--CGGAGCCgCACG--AGUC- -5'
30210 5' -61.6 NC_006273.1 + 190545 0.68 0.664851
Target:  5'- aCGCCACgcgauuGGCCgUCGGCGUccGCagUCGGg -3'
miRNA:   3'- gGCGGUGac----CCGG-AGCCGCA--CG--AGUC- -5'
30210 5' -61.6 NC_006273.1 + 2545 0.68 0.664851
Target:  5'- uUGCUACguccGGGCCgCGGCGagGCUgAGg -3'
miRNA:   3'- gGCGGUGa---CCCGGaGCCGCa-CGAgUC- -5'
30210 5' -61.6 NC_006273.1 + 147906 0.68 0.655323
Target:  5'- aCGCUGCgcuGGCCUCGGcCGUGaCUaCGGa -3'
miRNA:   3'- gGCGGUGac-CCGGAGCC-GCAC-GA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 88042 0.69 0.626667
Target:  5'- uCCGUuaauCGCUGGGCgUCGGCGU-C-CAGc -3'
miRNA:   3'- -GGCG----GUGACCCGgAGCCGCAcGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 161637 0.69 0.588538
Target:  5'- gCGCCGCUgccGGGCCUCGGCc-GC-CGc -3'
miRNA:   3'- gGCGGUGA---CCCGGAGCCGcaCGaGUc -5'
30210 5' -61.6 NC_006273.1 + 147470 0.7 0.560209
Target:  5'- uCCGUCGCgGGcaacuccauuuGCUUCGGCGUGCcCGGc -3'
miRNA:   3'- -GGCGGUGaCC-----------CGGAGCCGCACGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 197303 0.7 0.560209
Target:  5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3'
miRNA:   3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5'
30210 5' -61.6 NC_006273.1 + 2410 0.7 0.560209
Target:  5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3'
miRNA:   3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.