miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 5' -61.6 NC_006273.1 + 2410 0.7 0.560209
Target:  5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3'
miRNA:   3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5'
30210 5' -61.6 NC_006273.1 + 2545 0.68 0.664851
Target:  5'- uUGCUACguccGGGCCgCGGCGagGCUgAGg -3'
miRNA:   3'- gGCGGUGa---CCCGGaGCCGCa-CGAgUC- -5'
30210 5' -61.6 NC_006273.1 + 13200 0.66 0.792517
Target:  5'- cCCGCUAC-GGGCCcgugCGGCGUuacaGCgUCuGg -3'
miRNA:   3'- -GGCGGUGaCCCGGa---GCCGCA----CG-AGuC- -5'
30210 5' -61.6 NC_006273.1 + 21458 0.73 0.402281
Target:  5'- aCCGCCACcgucGcCCUCaGCGUGCUCAGc -3'
miRNA:   3'- -GGCGGUGacc-C-GGAGcCGCACGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 21706 0.67 0.748706
Target:  5'- gUCGCCGCa-GGCCuuugUCGGCGcgGCUCu- -3'
miRNA:   3'- -GGCGGUGacCCGG----AGCCGCa-CGAGuc -5'
30210 5' -61.6 NC_006273.1 + 21848 0.67 0.721288
Target:  5'- aCGgCGCUGGGaCUUUGGC-UGCUgCGGg -3'
miRNA:   3'- gGCgGUGACCC-GGAGCCGcACGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 23619 0.66 0.757676
Target:  5'- gCCGCCGagcccGGGCCUgcucaccauuuaUaGCGUGCUCAc -3'
miRNA:   3'- -GGCGGUga---CCCGGA------------GcCGCACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 29934 0.66 0.783978
Target:  5'- cUCGCCuagACUuugcGGGCCUCGGCuugGCUaCAc -3'
miRNA:   3'- -GGCGG---UGA----CCCGGAGCCGca-CGA-GUc -5'
30210 5' -61.6 NC_006273.1 + 33417 0.67 0.730504
Target:  5'- aCCGCCuc-GGGCgUCGGCG-GCgcgCGa -3'
miRNA:   3'- -GGCGGugaCCCGgAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 38084 0.73 0.378767
Target:  5'- gCCGCCGC-GcGGCCUCGGCG-GCgggCGc -3'
miRNA:   3'- -GGCGGUGaC-CCGGAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 42212 0.71 0.513925
Target:  5'- gCCGCCgaacgggcaGCgUGGGCUUCGGCG-GC-CGGu -3'
miRNA:   3'- -GGCGG---------UG-ACCCGGAGCCGCaCGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 44788 0.67 0.721288
Target:  5'- aUCGCCGCggccgaugGGcGCCggCGGaCGUGaCUCGGc -3'
miRNA:   3'- -GGCGGUGa-------CC-CGGa-GCC-GCAC-GAGUC- -5'
30210 5' -61.6 NC_006273.1 + 47840 0.79 0.166443
Target:  5'- gUCGUCGCUGGGCCUCGGCGccGUaCGGc -3'
miRNA:   3'- -GGCGGUGACCCGGAGCCGCa-CGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 52362 0.67 0.721288
Target:  5'- gUCGCCACUcGGCCUCGuccaGCaG-GCUCAu -3'
miRNA:   3'- -GGCGGUGAcCCGGAGC----CG-CaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 60247 0.68 0.683832
Target:  5'- aCCGCgACUGGGCa-CGGCGggaccGCUg-- -3'
miRNA:   3'- -GGCGgUGACCCGgaGCCGCa----CGAguc -5'
30210 5' -61.6 NC_006273.1 + 65109 0.72 0.460586
Target:  5'- gUGCuCAC-GGGCUUCGGCGUGCa--- -3'
miRNA:   3'- gGCG-GUGaCCCGGAGCCGCACGaguc -5'
30210 5' -61.6 NC_006273.1 + 67230 0.7 0.532271
Target:  5'- aCCgGCUGCUGG-CCUaCGGCGUGCUg-- -3'
miRNA:   3'- -GG-CGGUGACCcGGA-GCCGCACGAguc -5'
30210 5' -61.6 NC_006273.1 + 70381 0.66 0.775319
Target:  5'- aCCGCCcuagacuacgcGCUGGGCUccuggcuuuUCGGCauacccguGUGuCUCGGc -3'
miRNA:   3'- -GGCGG-----------UGACCCGG---------AGCCG--------CAC-GAGUC- -5'
30210 5' -61.6 NC_006273.1 + 70937 0.67 0.721288
Target:  5'- aCGCC--UGGGCgCgacgCGGCGUGCUg-- -3'
miRNA:   3'- gGCGGugACCCG-Ga---GCCGCACGAguc -5'
30210 5' -61.6 NC_006273.1 + 73730 0.66 0.783978
Target:  5'- cCCGCCGCcaUGGGUggCGGCGgcgGC-CGa -3'
miRNA:   3'- -GGCGGUG--ACCCGgaGCCGCa--CGaGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.