miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 5' -61.6 NC_006273.1 + 83402 0.67 0.702664
Target:  5'- gCCGCCACccGGCC-CGGCG-GCgcccgagCGGg -3'
miRNA:   3'- -GGCGGUGacCCGGaGCCGCaCGa------GUC- -5'
30210 5' -61.6 NC_006273.1 + 84843 0.68 0.683832
Target:  5'- -gGCCcgUGGGCCUgGGCcugcuagacGUGCUCAa -3'
miRNA:   3'- ggCGGugACCCGGAgCCG---------CACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 87415 0.7 0.52215
Target:  5'- gCCGCCGCcGGcuccuccGCCUCgGGCGacggggGCUCGGa -3'
miRNA:   3'- -GGCGGUGaCC-------CGGAG-CCGCa-----CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 88042 0.69 0.626667
Target:  5'- uCCGUuaauCGCUGGGCgUCGGCGU-C-CAGc -3'
miRNA:   3'- -GGCG----GUGACCCGgAGCCGCAcGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 91203 0.73 0.402281
Target:  5'- uCgGCCACgcgcuccaGGGCCUCGGCGauCUCGGc -3'
miRNA:   3'- -GgCGGUGa-------CCCGGAGCCGCacGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 91976 0.67 0.730504
Target:  5'- gCGCgGCa-GGCCgcgcCGGCGUGCUUAa -3'
miRNA:   3'- gGCGgUGacCCGGa---GCCGCACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 94239 0.66 0.775319
Target:  5'- uCCGCgGCaGGGUUcCGGCcGUGCUgCGGu -3'
miRNA:   3'- -GGCGgUGaCCCGGaGCCG-CACGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 99293 0.66 0.775319
Target:  5'- aUCGCCGCccacGGcGuCCUCGGCGUcgUCGGa -3'
miRNA:   3'- -GGCGGUGa---CC-C-GGAGCCGCAcgAGUC- -5'
30210 5' -61.6 NC_006273.1 + 101567 0.66 0.800929
Target:  5'- gCGCgAC-GGGCg-CGGCGUucgcgcucGCUCAGg -3'
miRNA:   3'- gGCGgUGaCCCGgaGCCGCA--------CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 111351 0.75 0.287951
Target:  5'- gCGCCGCUGGGUUcagCGGCGUGaucCAGg -3'
miRNA:   3'- gGCGGUGACCCGGa--GCCGCACga-GUC- -5'
30210 5' -61.6 NC_006273.1 + 123083 0.73 0.410323
Target:  5'- aCGCCACUGGGUCggcUGGCGc-CUCGGu -3'
miRNA:   3'- gGCGGUGACCCGGa--GCCGCacGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 131256 0.8 0.140825
Target:  5'- aUCGCCGCgucGGGUCUCGGCGUGCgcgCGc -3'
miRNA:   3'- -GGCGGUGa--CCCGGAGCCGCACGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 139712 0.67 0.739646
Target:  5'- gUCGUCcCUGuGGugucgucuuCCUCGGCGUcagGCUCAGa -3'
miRNA:   3'- -GGCGGuGAC-CC---------GGAGCCGCA---CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 141070 0.66 0.792517
Target:  5'- aCCGgCGCcGGGCCUCGGCcGgggagGgUgGGg -3'
miRNA:   3'- -GGCgGUGaCCCGGAGCCG-Ca----CgAgUC- -5'
30210 5' -61.6 NC_006273.1 + 142806 0.66 0.76655
Target:  5'- gCCGUCGCuggUGGGCacgGGCGUGCaccgCGGu -3'
miRNA:   3'- -GGCGGUG---ACCCGgagCCGCACGa---GUC- -5'
30210 5' -61.6 NC_006273.1 + 144565 0.68 0.69327
Target:  5'- -aGCCGgUGcgcgacGGCCUCGGUcUGCUCAu -3'
miRNA:   3'- ggCGGUgAC------CCGGAGCCGcACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 144610 0.71 0.481587
Target:  5'- -gGCUGCUGGGCgcuUccauggaccugugcuUCGGCGUGCUCAa -3'
miRNA:   3'- ggCGGUGACCCG---G---------------AGCCGCACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 147470 0.7 0.560209
Target:  5'- uCCGUCGCgGGcaacuccauuuGCUUCGGCGUGCcCGGc -3'
miRNA:   3'- -GGCGGUGaCC-----------CGGAGCCGCACGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 147906 0.68 0.655323
Target:  5'- aCGCUGCgcuGGCCUCGGcCGUGaCUaCGGa -3'
miRNA:   3'- gGCGGUGac-CCGGAGCC-GCAC-GA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 150547 0.68 0.674356
Target:  5'- gCCGCCGC-GGccGUCUCGG-GUGCcuUCAGg -3'
miRNA:   3'- -GGCGGUGaCC--CGGAGCCgCACG--AGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.