miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 5' -61.6 NC_006273.1 + 232977 0.73 0.378767
Target:  5'- gCCGCCGC-GcGGCCUCGGCG-GCgggCGc -3'
miRNA:   3'- -GGCGGUGaC-CCGGAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 211048 0.67 0.712005
Target:  5'- uCUGUCGCUGGGUCgCGGUGggaaaGCgCAGa -3'
miRNA:   3'- -GGCGGUGACCCGGaGCCGCa----CGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 207591 0.71 0.513925
Target:  5'- gCUGCUACUGGGUCUuuucauuuucuuUGGUGUGUUCu- -3'
miRNA:   3'- -GGCGGUGACCCGGA------------GCCGCACGAGuc -5'
30210 5' -61.6 NC_006273.1 + 206581 0.68 0.69327
Target:  5'- gUGCgGCUaGGGCCcCGGCGUaGUUUGGa -3'
miRNA:   3'- gGCGgUGA-CCCGGaGCCGCA-CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 202155 0.71 0.513925
Target:  5'- gUCGCCGCcccgGGGcCCUCGGUGcGCUacCGGg -3'
miRNA:   3'- -GGCGGUGa---CCC-GGAGCCGCaCGA--GUC- -5'
30210 5' -61.6 NC_006273.1 + 200833 0.66 0.800929
Target:  5'- cUCGCUGuCUGGGCCgcgcuucgaGGCGUGCc--- -3'
miRNA:   3'- -GGCGGU-GACCCGGag-------CCGCACGaguc -5'
30210 5' -61.6 NC_006273.1 + 198610 1.1 0.001307
Target:  5'- gCCGCCACUGGGCCUCGGCGUGCUCAGg -3'
miRNA:   3'- -GGCGGUGACCCGGAGCCGCACGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 197303 0.7 0.560209
Target:  5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3'
miRNA:   3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5'
30210 5' -61.6 NC_006273.1 + 197181 0.66 0.757676
Target:  5'- uCCGCCGuCUccggaugaGcGGCCgCGGCGcggGCUCGGc -3'
miRNA:   3'- -GGCGGU-GA--------C-CCGGaGCCGCa--CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 193979 0.66 0.783978
Target:  5'- cUCGCC-CUGGGCUccgaCGGCGccguUGCcCGGg -3'
miRNA:   3'- -GGCGGuGACCCGGa---GCCGC----ACGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 191807 0.67 0.739646
Target:  5'- gCGCCGC-GGcacuuGCCUaCGGCGcUGCUcCAGg -3'
miRNA:   3'- gGCGGUGaCC-----CGGA-GCCGC-ACGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 190545 0.68 0.664851
Target:  5'- aCGCCACgcgauuGGCCgUCGGCGUccGCagUCGGg -3'
miRNA:   3'- gGCGGUGac----CCGG-AGCCGCA--CG--AGUC- -5'
30210 5' -61.6 NC_006273.1 + 187888 0.72 0.443462
Target:  5'- aUCGa-GCUGGGCCUCGcGCG-GCUCGc -3'
miRNA:   3'- -GGCggUGACCCGGAGC-CGCaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 163440 0.66 0.775319
Target:  5'- -aGCCguGCUGGGCCUCaacGCG-GCUUg- -3'
miRNA:   3'- ggCGG--UGACCCGGAGc--CGCaCGAGuc -5'
30210 5' -61.6 NC_006273.1 + 161637 0.69 0.588538
Target:  5'- gCGCCGCUgccGGGCCUCGGCc-GC-CGc -3'
miRNA:   3'- gGCGGUGA---CCCGGAGCCGcaCGaGUc -5'
30210 5' -61.6 NC_006273.1 + 160563 0.67 0.721288
Target:  5'- cCCGCgGCUGGuaCgagCGGUGgGCUCGa -3'
miRNA:   3'- -GGCGgUGACCcgGa--GCCGCaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 160211 0.68 0.674356
Target:  5'- gUGCCACUGGGUguaCUCGGU--GCUcCAGc -3'
miRNA:   3'- gGCGGUGACCCG---GAGCCGcaCGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 151987 0.71 0.469279
Target:  5'- gCGCCGCcGGGCCgggUGGCG-GCggCAGc -3'
miRNA:   3'- gGCGGUGaCCCGGa--GCCGCaCGa-GUC- -5'
30210 5' -61.6 NC_006273.1 + 150547 0.68 0.674356
Target:  5'- gCCGCCGC-GGccGUCUCGG-GUGCcuUCAGg -3'
miRNA:   3'- -GGCGGUGaCC--CGGAGCCgCACG--AGUC- -5'
30210 5' -61.6 NC_006273.1 + 147906 0.68 0.655323
Target:  5'- aCGCUGCgcuGGCCUCGGcCGUGaCUaCGGa -3'
miRNA:   3'- gGCGGUGac-CCGGAGCC-GCAC-GA-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.