miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 5' -61.6 NC_006273.1 + 191807 0.67 0.739646
Target:  5'- gCGCCGC-GGcacuuGCCUaCGGCGcUGCUcCAGg -3'
miRNA:   3'- gGCGGUGaCC-----CGGA-GCCGC-ACGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 147906 0.68 0.655323
Target:  5'- aCGCUGCgcuGGCCUCGGcCGUGaCUaCGGa -3'
miRNA:   3'- gGCGGUGac-CCGGAGCC-GCAC-GA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 60247 0.68 0.683832
Target:  5'- aCCGCgACUGGGCa-CGGCGggaccGCUg-- -3'
miRNA:   3'- -GGCGgUGACCCGgaGCCGCa----CGAguc -5'
30210 5' -61.6 NC_006273.1 + 144565 0.68 0.69327
Target:  5'- -aGCCGgUGcgcgacGGCCUCGGUcUGCUCAu -3'
miRNA:   3'- ggCGGUgAC------CCGGAGCCGcACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 206581 0.68 0.69327
Target:  5'- gUGCgGCUaGGGCCcCGGCGUaGUUUGGa -3'
miRNA:   3'- gGCGgUGA-CCCGGaGCCGCA-CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 211048 0.67 0.712005
Target:  5'- uCUGUCGCUGGGUCgCGGUGggaaaGCgCAGa -3'
miRNA:   3'- -GGCGGUGACCCGGaGCCGCa----CGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 52362 0.67 0.721288
Target:  5'- gUCGCCACUcGGCCUCGuccaGCaG-GCUCAu -3'
miRNA:   3'- -GGCGGUGAcCCGGAGC----CG-CaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 33417 0.67 0.730504
Target:  5'- aCCGCCuc-GGGCgUCGGCG-GCgcgCGa -3'
miRNA:   3'- -GGCGGugaCCCGgAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 139712 0.67 0.739646
Target:  5'- gUCGUCcCUGuGGugucgucuuCCUCGGCGUcagGCUCAGa -3'
miRNA:   3'- -GGCGGuGAC-CC---------GGAGCCGCA---CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 88042 0.69 0.626667
Target:  5'- uCCGUuaauCGCUGGGCgUCGGCGU-C-CAGc -3'
miRNA:   3'- -GGCG----GUGACCCGgAGCCGCAcGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 197303 0.7 0.560209
Target:  5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3'
miRNA:   3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5'
30210 5' -61.6 NC_006273.1 + 87415 0.7 0.52215
Target:  5'- gCCGCCGCcGGcuccuccGCCUCgGGCGacggggGCUCGGa -3'
miRNA:   3'- -GGCGGUGaCC-------CGGAG-CCGCa-----CGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 131256 0.8 0.140825
Target:  5'- aUCGCCGCgucGGGUCUCGGCGUGCgcgCGc -3'
miRNA:   3'- -GGCGGUGa--CCCGGAGCCGCACGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 111351 0.75 0.287951
Target:  5'- gCGCCGCUGGGUUcagCGGCGUGaucCAGg -3'
miRNA:   3'- gGCGGUGACCCGGa--GCCGCACga-GUC- -5'
30210 5' -61.6 NC_006273.1 + 232977 0.73 0.378767
Target:  5'- gCCGCCGC-GcGGCCUCGGCG-GCgggCGc -3'
miRNA:   3'- -GGCGGUGaC-CCGGAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 123083 0.73 0.410323
Target:  5'- aCGCCACUGGGUCggcUGGCGc-CUCGGu -3'
miRNA:   3'- gGCGGUGACCCGGa--GCCGCacGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 65109 0.72 0.460586
Target:  5'- gUGCuCAC-GGGCUUCGGCGUGCa--- -3'
miRNA:   3'- gGCG-GUGaCCCGGAGCCGCACGaguc -5'
30210 5' -61.6 NC_006273.1 + 151987 0.71 0.469279
Target:  5'- gCGCCGCcGGGCCgggUGGCG-GCggCAGc -3'
miRNA:   3'- gGCGGUGaCCCGGa--GCCGCaCGa-GUC- -5'
30210 5' -61.6 NC_006273.1 + 144610 0.71 0.481587
Target:  5'- -gGCUGCUGGGCgcuUccauggaccugugcuUCGGCGUGCUCAa -3'
miRNA:   3'- ggCGGUGACCCG---G---------------AGCCGCACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 42212 0.71 0.513925
Target:  5'- gCCGCCgaacgggcaGCgUGGGCUUCGGCG-GC-CGGu -3'
miRNA:   3'- -GGCGG---------UG-ACCCGGAGCCGCaCGaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.