Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30210 | 5' | -61.6 | NC_006273.1 | + | 151987 | 0.71 | 0.469279 |
Target: 5'- gCGCCGCcGGGCCgggUGGCG-GCggCAGc -3' miRNA: 3'- gGCGGUGaCCCGGa--GCCGCaCGa-GUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 144610 | 0.71 | 0.481587 |
Target: 5'- -gGCUGCUGGGCgcuUccauggaccugugcuUCGGCGUGCUCAa -3' miRNA: 3'- ggCGGUGACCCG---G---------------AGCCGCACGAGUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 42212 | 0.71 | 0.513925 |
Target: 5'- gCCGCCgaacgggcaGCgUGGGCUUCGGCG-GC-CGGu -3' miRNA: 3'- -GGCGG---------UG-ACCCGGAGCCGCaCGaGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 87415 | 0.7 | 0.52215 |
Target: 5'- gCCGCCGCcGGcuccuccGCCUCgGGCGacggggGCUCGGa -3' miRNA: 3'- -GGCGGUGaCC-------CGGAG-CCGCa-----CGAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 197303 | 0.7 | 0.560209 |
Target: 5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3' miRNA: 3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 88042 | 0.69 | 0.626667 |
Target: 5'- uCCGUuaauCGCUGGGCgUCGGCGU-C-CAGc -3' miRNA: 3'- -GGCG----GUGACCCGgAGCCGCAcGaGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 147470 | 0.7 | 0.560209 |
Target: 5'- uCCGUCGCgGGcaacuccauuuGCUUCGGCGUGCcCGGc -3' miRNA: 3'- -GGCGGUGaCC-----------CGGAGCCGCACGaGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 2410 | 0.7 | 0.560209 |
Target: 5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3' miRNA: 3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 161637 | 0.69 | 0.588538 |
Target: 5'- gCGCCGCUgccGGGCCUCGGCc-GC-CGc -3' miRNA: 3'- gGCGGUGA---CCCGGAGCCGcaCGaGUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 2545 | 0.68 | 0.664851 |
Target: 5'- uUGCUACguccGGGCCgCGGCGagGCUgAGg -3' miRNA: 3'- gGCGGUGa---CCCGGaGCCGCa-CGAgUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 190545 | 0.68 | 0.664851 |
Target: 5'- aCGCCACgcgauuGGCCgUCGGCGUccGCagUCGGg -3' miRNA: 3'- gGCGGUGac----CCGG-AGCCGCA--CG--AGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 160211 | 0.68 | 0.674356 |
Target: 5'- gUGCCACUGGGUguaCUCGGU--GCUcCAGc -3' miRNA: 3'- gGCGGUGACCCG---GAGCCGcaCGA-GUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 67230 | 0.7 | 0.532271 |
Target: 5'- aCCgGCUGCUGG-CCUaCGGCGUGCUg-- -3' miRNA: 3'- -GG-CGGUGACCcGGA-GCCGCACGAguc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 202155 | 0.71 | 0.513925 |
Target: 5'- gUCGCCGCcccgGGGcCCUCGGUGcGCUacCGGg -3' miRNA: 3'- -GGCGGUGa---CCC-GGAGCCGCaCGA--GUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 207591 | 0.71 | 0.513925 |
Target: 5'- gCUGCUACUGGGUCUuuucauuuucuuUGGUGUGUUCu- -3' miRNA: 3'- -GGCGGUGACCCGGA------------GCCGCACGAGuc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 187888 | 0.72 | 0.443462 |
Target: 5'- aUCGa-GCUGGGCCUCGcGCG-GCUCGc -3' miRNA: 3'- -GGCggUGACCCGGAGC-CGCaCGAGUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 21458 | 0.73 | 0.402281 |
Target: 5'- aCCGCCACcgucGcCCUCaGCGUGCUCAGc -3' miRNA: 3'- -GGCGGUGacc-C-GGAGcCGCACGAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 91203 | 0.73 | 0.402281 |
Target: 5'- uCgGCCACgcgcuccaGGGCCUCGGCGauCUCGGc -3' miRNA: 3'- -GgCGGUGa-------CCCGGAGCCGCacGAGUC- -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 38084 | 0.73 | 0.378767 |
Target: 5'- gCCGCCGC-GcGGCCUCGGCG-GCgggCGc -3' miRNA: 3'- -GGCGGUGaC-CCGGAGCCGCaCGa--GUc -5' |
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30210 | 5' | -61.6 | NC_006273.1 | + | 200833 | 0.66 | 0.800929 |
Target: 5'- cUCGCUGuCUGGGCCgcgcuucgaGGCGUGCc--- -3' miRNA: 3'- -GGCGGU-GACCCGGag-------CCGCACGaguc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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