miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30210 5' -61.6 NC_006273.1 + 47840 0.79 0.166443
Target:  5'- gUCGUCGCUGGGCCUCGGCGccGUaCGGc -3'
miRNA:   3'- -GGCGGUGACCCGGAGCCGCa-CGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 21848 0.67 0.721288
Target:  5'- aCGgCGCUGGGaCUUUGGC-UGCUgCGGg -3'
miRNA:   3'- gGCgGUGACCC-GGAGCCGcACGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 70937 0.67 0.721288
Target:  5'- aCGCC--UGGGCgCgacgCGGCGUGCUg-- -3'
miRNA:   3'- gGCGGugACCCG-Ga---GCCGCACGAguc -5'
30210 5' -61.6 NC_006273.1 + 200833 0.66 0.800929
Target:  5'- cUCGCUGuCUGGGCCgcgcuucgaGGCGUGCc--- -3'
miRNA:   3'- -GGCGGU-GACCCGGag-------CCGCACGaguc -5'
30210 5' -61.6 NC_006273.1 + 187888 0.72 0.443462
Target:  5'- aUCGa-GCUGGGCCUCGcGCG-GCUCGc -3'
miRNA:   3'- -GGCggUGACCCGGAGC-CGCaCGAGUc -5'
30210 5' -61.6 NC_006273.1 + 207591 0.71 0.513925
Target:  5'- gCUGCUACUGGGUCUuuucauuuucuuUGGUGUGUUCu- -3'
miRNA:   3'- -GGCGGUGACCCGGA------------GCCGCACGAGuc -5'
30210 5' -61.6 NC_006273.1 + 67230 0.7 0.532271
Target:  5'- aCCgGCUGCUGG-CCUaCGGCGUGCUg-- -3'
miRNA:   3'- -GG-CGGUGACCcGGA-GCCGCACGAguc -5'
30210 5' -61.6 NC_006273.1 + 147470 0.7 0.560209
Target:  5'- uCCGUCGCgGGcaacuccauuuGCUUCGGCGUGCcCGGc -3'
miRNA:   3'- -GGCGGUGaCC-----------CGGAGCCGCACGaGUC- -5'
30210 5' -61.6 NC_006273.1 + 2545 0.68 0.664851
Target:  5'- uUGCUACguccGGGCCgCGGCGagGCUgAGg -3'
miRNA:   3'- gGCGGUGa---CCCGGaGCCGCa-CGAgUC- -5'
30210 5' -61.6 NC_006273.1 + 83402 0.67 0.702664
Target:  5'- gCCGCCACccGGCC-CGGCG-GCgcccgagCGGg -3'
miRNA:   3'- -GGCGGUGacCCGGaGCCGCaCGa------GUC- -5'
30210 5' -61.6 NC_006273.1 + 160211 0.68 0.674356
Target:  5'- gUGCCACUGGGUguaCUCGGU--GCUcCAGc -3'
miRNA:   3'- gGCGGUGACCCG---GAGCCGcaCGA-GUC- -5'
30210 5' -61.6 NC_006273.1 + 161637 0.69 0.588538
Target:  5'- gCGCCGCUgccGGGCCUCGGCc-GC-CGc -3'
miRNA:   3'- gGCGGUGA---CCCGGAGCCGcaCGaGUc -5'
30210 5' -61.6 NC_006273.1 + 38084 0.73 0.378767
Target:  5'- gCCGCCGC-GcGGCCUCGGCG-GCgggCGc -3'
miRNA:   3'- -GGCGGUGaC-CCGGAGCCGCaCGa--GUc -5'
30210 5' -61.6 NC_006273.1 + 150547 0.68 0.674356
Target:  5'- gCCGCCGC-GGccGUCUCGG-GUGCcuUCAGg -3'
miRNA:   3'- -GGCGGUGaCC--CGGAGCCgCACG--AGUC- -5'
30210 5' -61.6 NC_006273.1 + 91203 0.73 0.402281
Target:  5'- uCgGCCACgcgcuccaGGGCCUCGGCGauCUCGGc -3'
miRNA:   3'- -GgCGGUGa-------CCCGGAGCCGCacGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 2410 0.7 0.560209
Target:  5'- cCCGCCGCcGaGGCCgcgCGGCG-GCUg-- -3'
miRNA:   3'- -GGCGGUGaC-CCGGa--GCCGCaCGAguc -5'
30210 5' -61.6 NC_006273.1 + 84843 0.68 0.683832
Target:  5'- -gGCCcgUGGGCCUgGGCcugcuagacGUGCUCAa -3'
miRNA:   3'- ggCGGugACCCGGAgCCG---------CACGAGUc -5'
30210 5' -61.6 NC_006273.1 + 44788 0.67 0.721288
Target:  5'- aUCGCCGCggccgaugGGcGCCggCGGaCGUGaCUCGGc -3'
miRNA:   3'- -GGCGGUGa-------CC-CGGa-GCC-GCAC-GAGUC- -5'
30210 5' -61.6 NC_006273.1 + 21458 0.73 0.402281
Target:  5'- aCCGCCACcgucGcCCUCaGCGUGCUCAGc -3'
miRNA:   3'- -GGCGGUGacc-C-GGAGcCGCACGAGUC- -5'
30210 5' -61.6 NC_006273.1 + 202155 0.71 0.513925
Target:  5'- gUCGCCGCcccgGGGcCCUCGGUGcGCUacCGGg -3'
miRNA:   3'- -GGCGGUGa---CCC-GGAGCCGCaCGA--GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.