miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 3' -59.5 NC_006273.1 + 50093 0.66 0.854109
Target:  5'- cCAcCACGCCGGCCCGAcguuugagcgGCCGaCa--- -3'
miRNA:   3'- uGUcGUGCGGUCGGGCU----------CGGC-Gauuc -5'
30211 3' -59.5 NC_006273.1 + 103544 0.66 0.854109
Target:  5'- gUAGC-CgGCCAGCCCcaGGCCGUgcGGg -3'
miRNA:   3'- uGUCGuG-CGGUCGGGc-UCGGCGauUC- -5'
30211 3' -59.5 NC_006273.1 + 142834 0.66 0.854109
Target:  5'- cGCGGUcUGCUcacGGCCaCGGGCUGCUGu- -3'
miRNA:   3'- -UGUCGuGCGG---UCGG-GCUCGGCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 136026 0.66 0.854109
Target:  5'- gACAGCGCugGCCGauCCgCGGGCCGCg--- -3'
miRNA:   3'- -UGUCGUG--CGGUc-GG-GCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 95137 0.66 0.854109
Target:  5'- gACGGCAaagGCuCAGCCgCG-GCCGCg--- -3'
miRNA:   3'- -UGUCGUg--CG-GUCGG-GCuCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 42714 0.66 0.854109
Target:  5'- gACAGCcggccaggccGCGCCacacGGCgaCGAGCCGCa--- -3'
miRNA:   3'- -UGUCG----------UGCGG----UCGg-GCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 1990 0.66 0.854109
Target:  5'- gACGuCGCGCCAGCggCGAGCgGCacgGAGa -3'
miRNA:   3'- -UGUcGUGCGGUCGg-GCUCGgCGa--UUC- -5'
30211 3' -59.5 NC_006273.1 + 6922 0.66 0.854109
Target:  5'- uGCAGC-CGCCgAGCCCGucgacGuuGCcgAAGu -3'
miRNA:   3'- -UGUCGuGCGG-UCGGGCu----CggCGa-UUC- -5'
30211 3' -59.5 NC_006273.1 + 197976 0.66 0.854109
Target:  5'- aGCGGCGCGCCccggcGCUCagucGCgGCUGAGc -3'
miRNA:   3'- -UGUCGUGCGGu----CGGGcu--CGgCGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 91233 0.66 0.853358
Target:  5'- uCGGCGCGCgaGGCUucggcggCGuGCCGCUGAc -3'
miRNA:   3'- uGUCGUGCGg-UCGG-------GCuCGGCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 215663 0.66 0.846512
Target:  5'- -aAGC-CGUgGGCCCacugcGGCCGCUGAa -3'
miRNA:   3'- ugUCGuGCGgUCGGGc----UCGGCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 42757 0.66 0.846512
Target:  5'- gACGGCGaGCUAcGCCgCGAGUCGCa--- -3'
miRNA:   3'- -UGUCGUgCGGU-CGG-GCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 196150 0.66 0.846512
Target:  5'- aGCAGCgucGCGCCAuGCCgCGuGaCGCUGAc -3'
miRNA:   3'- -UGUCG---UGCGGU-CGG-GCuCgGCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 209433 0.66 0.846512
Target:  5'- aGCGGCgucucguaGCGUaCAGCCaGGGCCGCUucGu -3'
miRNA:   3'- -UGUCG--------UGCG-GUCGGgCUCGGCGAuuC- -5'
30211 3' -59.5 NC_006273.1 + 52548 0.66 0.846512
Target:  5'- uGCAGCA-GCCgAGCUCGucGCCGCc--- -3'
miRNA:   3'- -UGUCGUgCGG-UCGGGCu-CGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 34494 0.66 0.846512
Target:  5'- gGCGGaaaGCGCCGGCgUUGAGCCaGCg--- -3'
miRNA:   3'- -UGUCg--UGCGGUCG-GGCUCGG-CGauuc -5'
30211 3' -59.5 NC_006273.1 + 32820 0.66 0.846512
Target:  5'- cACAGCACGCU-GCCgucGGCCGCc--- -3'
miRNA:   3'- -UGUCGUGCGGuCGGgc-UCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 189951 0.66 0.846512
Target:  5'- uGCAGCuCGUCGGCCggcgUGGGCgGCUcgcgGAGa -3'
miRNA:   3'- -UGUCGuGCGGUCGG----GCUCGgCGA----UUC- -5'
30211 3' -59.5 NC_006273.1 + 194874 0.66 0.845742
Target:  5'- gUAGCGCGCCgggucgccuguccGGCagcagCCGGGCCGCc--- -3'
miRNA:   3'- uGUCGUGCGG-------------UCG-----GGCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 79036 0.66 0.838736
Target:  5'- gUAGUGCGCCAGgCUGGGCCcacGCg--- -3'
miRNA:   3'- uGUCGUGCGGUCgGGCUCGG---CGauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.