miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 3' -59.5 NC_006273.1 + 194340 0.66 0.830786
Target:  5'- cCGGCACGCaaCAGCCCGccaucCCGCg--- -3'
miRNA:   3'- uGUCGUGCG--GUCGGGCuc---GGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 182785 0.66 0.814393
Target:  5'- cACAGUACaGCgAGCCCaaGAGaCCGCa--- -3'
miRNA:   3'- -UGUCGUG-CGgUCGGG--CUC-GGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 31246 0.66 0.814393
Target:  5'- cACGGUACGCCGGgU--AGCCGCgcAGg -3'
miRNA:   3'- -UGUCGUGCGGUCgGgcUCGGCGauUC- -5'
30211 3' -59.5 NC_006273.1 + 137598 0.66 0.830786
Target:  5'- -aAGCugGUCGGCaaGAGCCGgaAAc -3'
miRNA:   3'- ugUCGugCGGUCGggCUCGGCgaUUc -5'
30211 3' -59.5 NC_006273.1 + 233704 0.66 0.822669
Target:  5'- cGCAGCAaCGUCuGUCgGAGCgccgGCUGAGg -3'
miRNA:   3'- -UGUCGU-GCGGuCGGgCUCGg---CGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 122613 0.66 0.814393
Target:  5'- cCAGCGCGauggaagcgcCCAGCaCCGAgaGCUGCUGu- -3'
miRNA:   3'- uGUCGUGC----------GGUCG-GGCU--CGGCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 71808 0.66 0.814393
Target:  5'- cACAGCAgGCCGuGCCCGuGCgaagugagaCGCagGAGa -3'
miRNA:   3'- -UGUCGUgCGGU-CGGGCuCG---------GCGa-UUC- -5'
30211 3' -59.5 NC_006273.1 + 133257 0.66 0.830786
Target:  5'- gGCAuGUugGCCggaaAGCCCGAggauGCCGCc--- -3'
miRNA:   3'- -UGU-CGugCGG----UCGGGCU----CGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 79036 0.66 0.838736
Target:  5'- gUAGUGCGCCAGgCUGGGCCcacGCg--- -3'
miRNA:   3'- uGUCGUGCGGUCgGGCUCGG---CGauuc -5'
30211 3' -59.5 NC_006273.1 + 129515 0.66 0.821849
Target:  5'- aGCAGCGCgacccggagaaugGCCGGCgCUGcGCCGCg--- -3'
miRNA:   3'- -UGUCGUG-------------CGGUCG-GGCuCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 30023 0.66 0.814393
Target:  5'- uGCAGCACuagguuCCAGCCCG-GCgGCc--- -3'
miRNA:   3'- -UGUCGUGc-----GGUCGGGCuCGgCGauuc -5'
30211 3' -59.5 NC_006273.1 + 196808 0.66 0.822669
Target:  5'- uGCGGCugGCUGGCgCUGGGCgcggUGCUGc- -3'
miRNA:   3'- -UGUCGugCGGUCG-GGCUCG----GCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 52548 0.66 0.846512
Target:  5'- uGCAGCA-GCCgAGCUCGucGCCGCc--- -3'
miRNA:   3'- -UGUCGUgCGG-UCGGGCu-CGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 110260 0.66 0.838736
Target:  5'- gACuuGgGCGCCGGCCucuucuuguCGGGCUGCUGc- -3'
miRNA:   3'- -UGu-CgUGCGGUCGG---------GCUCGGCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 218482 0.66 0.837948
Target:  5'- cGCAGCcuccguuGCGuuCCAGCCUG-GCCGCg--- -3'
miRNA:   3'- -UGUCG-------UGC--GGUCGGGCuCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 197272 0.66 0.830786
Target:  5'- -gGGCGCGCUGGCgCUGGGgCGCg--- -3'
miRNA:   3'- ugUCGUGCGGUCG-GGCUCgGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 32820 0.66 0.846512
Target:  5'- cACAGCACGCU-GCCgucGGCCGCc--- -3'
miRNA:   3'- -UGUCGUGCGGuCGGgc-UCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 197976 0.66 0.854109
Target:  5'- aGCGGCGCGCCccggcGCUCagucGCgGCUGAGc -3'
miRNA:   3'- -UGUCGUGCGGu----CGGGcu--CGgCGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 211753 0.66 0.828368
Target:  5'- -gAGCACGCUauaaauggugagcaGGCCCGGGCUcgGCg--- -3'
miRNA:   3'- ugUCGUGCGG--------------UCGGGCUCGG--CGauuc -5'
30211 3' -59.5 NC_006273.1 + 31389 0.66 0.822669
Target:  5'- uGCGGCAuCGCgGcacGCCCGAaucGCCGCg--- -3'
miRNA:   3'- -UGUCGU-GCGgU---CGGGCU---CGGCGauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.