miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 3' -59.5 NC_006273.1 + 198916 1.08 0.00211
Target:  5'- aACAGCACGCCAGCCCGAGCCGCUAAGg -3'
miRNA:   3'- -UGUCGUGCGGUCGGGCUCGGCGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 221798 0.83 0.107087
Target:  5'- cCAGCACGgCGGCCCGGGCCGCc--- -3'
miRNA:   3'- uGUCGUGCgGUCGGGCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 197255 0.78 0.223161
Target:  5'- uCGGCcuCGCCGGCCCGAGCgCGCcGGGg -3'
miRNA:   3'- uGUCGu-GCGGUCGGGCUCG-GCGaUUC- -5'
30211 3' -59.5 NC_006273.1 + 65565 0.78 0.239365
Target:  5'- uGCGGCGaaggggcccUGCCGGCCCuGGGCCGCUAc- -3'
miRNA:   3'- -UGUCGU---------GCGGUCGGG-CUCGGCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 45888 0.78 0.239365
Target:  5'- cACAGCGCGgCGG-CCGGGCCGCcGAGg -3'
miRNA:   3'- -UGUCGUGCgGUCgGGCUCGGCGaUUC- -5'
30211 3' -59.5 NC_006273.1 + 117091 0.76 0.298526
Target:  5'- gGCGGCaacuggcguucaccACGCCGGCCUGAGCgCGCUcAGc -3'
miRNA:   3'- -UGUCG--------------UGCGGUCGGGCUCG-GCGAuUC- -5'
30211 3' -59.5 NC_006273.1 + 38183 0.76 0.307265
Target:  5'- gGCGGgACGCCgAGCCCGcGCCGCg--- -3'
miRNA:   3'- -UGUCgUGCGG-UCGGGCuCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 198889 0.76 0.314119
Target:  5'- uACA-CGCGCgAGCCCGucauGCCGCUGGGc -3'
miRNA:   3'- -UGUcGUGCGgUCGGGCu---CGGCGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 84836 0.75 0.335371
Target:  5'- gACGGUugGCCcgugGGCCUGGGCCuGCUAGa -3'
miRNA:   3'- -UGUCGugCGG----UCGGGCUCGG-CGAUUc -5'
30211 3' -59.5 NC_006273.1 + 84036 0.75 0.350113
Target:  5'- -aGGCGCGCCGGCgCCaaauGAGCCGCgAAGc -3'
miRNA:   3'- ugUCGUGCGGUCG-GG----CUCGGCGaUUC- -5'
30211 3' -59.5 NC_006273.1 + 221287 0.74 0.373077
Target:  5'- aACAGC-CGgCGGUCCGAGCCaCUGAGc -3'
miRNA:   3'- -UGUCGuGCgGUCGGGCUCGGcGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 25463 0.74 0.388945
Target:  5'- gGCAGCugGCCGGCuuGA-CCGCg--- -3'
miRNA:   3'- -UGUCGugCGGUCGggCUcGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 142355 0.74 0.413561
Target:  5'- gACAGCGCcgugGCaucgGGCCCGGGCCGCg--- -3'
miRNA:   3'- -UGUCGUG----CGg---UCGGGCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 104600 0.74 0.413561
Target:  5'- uGCAGCugGCCcagcGCCugugCGAGCUGCUGAu -3'
miRNA:   3'- -UGUCGugCGGu---CGG----GCUCGGCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 57856 0.73 0.430496
Target:  5'- uACAGcCGCGCCgAGCCagCGGGCCcccGCUAAGa -3'
miRNA:   3'- -UGUC-GUGCGG-UCGG--GCUCGG---CGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 90930 0.73 0.439114
Target:  5'- cCGGCGCGCgAGCCCGuguagugcgAGCCGCc--- -3'
miRNA:   3'- uGUCGUGCGgUCGGGC---------UCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 102836 0.73 0.446954
Target:  5'- -aGGCGCGCCGGCCgcguccaCGGGCaCGCUGu- -3'
miRNA:   3'- ugUCGUGCGGUCGG-------GCUCG-GCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 206544 0.73 0.446954
Target:  5'- cACAGCGucugGCCAGCuaccucugcugccCCGAGCCGCUGc- -3'
miRNA:   3'- -UGUCGUg---CGGUCG-------------GGCUCGGCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 143410 0.73 0.44783
Target:  5'- -aAGCACGCCGGCgCGGccuGCCGCgcguugGAGa -3'
miRNA:   3'- ugUCGUGCGGUCGgGCU---CGGCGa-----UUC- -5'
30211 3' -59.5 NC_006273.1 + 133532 0.73 0.456641
Target:  5'- cACAGCuacgcgcucuGgGCCAGCCUcugGAGCCGCUGu- -3'
miRNA:   3'- -UGUCG----------UgCGGUCGGG---CUCGGCGAUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.