Results 21 - 40 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30211 | 3' | -59.5 | NC_006273.1 | + | 48883 | 0.66 | 0.838736 |
Target: 5'- cACAGCucGCGCUAcuuGCCCuAGCgGCUGGa -3' miRNA: 3'- -UGUCG--UGCGGU---CGGGcUCGgCGAUUc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 110260 | 0.66 | 0.838736 |
Target: 5'- gACuuGgGCGCCGGCCucuucuuguCGGGCUGCUGc- -3' miRNA: 3'- -UGu-CgUGCGGUCGG---------GCUCGGCGAUuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 79036 | 0.66 | 0.838736 |
Target: 5'- gUAGUGCGCCAGgCUGGGCCcacGCg--- -3' miRNA: 3'- uGUCGUGCGGUCgGGCUCGG---CGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 218482 | 0.66 | 0.837948 |
Target: 5'- cGCAGCcuccguuGCGuuCCAGCCUG-GCCGCg--- -3' miRNA: 3'- -UGUCG-------UGC--GGUCGGGCuCGGCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 197272 | 0.66 | 0.830786 |
Target: 5'- -gGGCGCGCUGGCgCUGGGgCGCg--- -3' miRNA: 3'- ugUCGUGCGGUCG-GGCUCgGCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 2536 | 0.66 | 0.830786 |
Target: 5'- uUAGCuuuuuUGCUAcGUCCGGGCCGCggcGAGg -3' miRNA: 3'- uGUCGu----GCGGU-CGGGCUCGGCGa--UUC- -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 234278 | 0.66 | 0.830786 |
Target: 5'- cCGGCACGCaaCAGCCCGccaucCCGCg--- -3' miRNA: 3'- uGUCGUGCG--GUCGGGCuc---GGCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 130781 | 0.66 | 0.830786 |
Target: 5'- aGCAGCuCGCacaGGCgCUGGGCCaGCUGc- -3' miRNA: 3'- -UGUCGuGCGg--UCG-GGCUCGG-CGAUuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 2379 | 0.66 | 0.830786 |
Target: 5'- -gGGCGCGCUGGCgCUGGGgCGCg--- -3' miRNA: 3'- ugUCGUGCGGUCG-GGCUCgGCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 198090 | 0.66 | 0.830786 |
Target: 5'- cCGGCAUGuCCGGCCgucgcaaGGGCUGCUcGGc -3' miRNA: 3'- uGUCGUGC-GGUCGGg------CUCGGCGAuUC- -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 185363 | 0.66 | 0.830786 |
Target: 5'- uACGGCugcauCGCCA-UCCGAGCCGggGAc -3' miRNA: 3'- -UGUCGu----GCGGUcGGGCUCGGCgaUUc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 190132 | 0.66 | 0.830786 |
Target: 5'- uGCGGCGCGagCAGCcgCCGGGCgGCa--- -3' miRNA: 3'- -UGUCGUGCg-GUCG--GGCUCGgCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 194340 | 0.66 | 0.830786 |
Target: 5'- cCGGCACGCaaCAGCCCGccaucCCGCg--- -3' miRNA: 3'- uGUCGUGCG--GUCGGGCuc---GGCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 137598 | 0.66 | 0.830786 |
Target: 5'- -aAGCugGUCGGCaaGAGCCGgaAAc -3' miRNA: 3'- ugUCGugCGGUCGggCUCGGCgaUUc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 133257 | 0.66 | 0.830786 |
Target: 5'- gGCAuGUugGCCggaaAGCCCGAggauGCCGCc--- -3' miRNA: 3'- -UGU-CGugCGG----UCGGGCU----CGGCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 211753 | 0.66 | 0.828368 |
Target: 5'- -gAGCACGCUauaaauggugagcaGGCCCGGGCUcgGCg--- -3' miRNA: 3'- ugUCGUGCGG--------------UCGGGCUCGG--CGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 48026 | 0.66 | 0.825935 |
Target: 5'- aACAGCGUGCCuccGCCgGAcauggcggugacggcGCCGCUGAc -3' miRNA: 3'- -UGUCGUGCGGu--CGGgCU---------------CGGCGAUUc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 31389 | 0.66 | 0.822669 |
Target: 5'- uGCGGCAuCGCgGcacGCCCGAaucGCCGCg--- -3' miRNA: 3'- -UGUCGU-GCGgU---CGGGCU---CGGCGauuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 196808 | 0.66 | 0.822669 |
Target: 5'- uGCGGCugGCUGGCgCUGGGCgcggUGCUGc- -3' miRNA: 3'- -UGUCGugCGGUCG-GGCUCG----GCGAUuc -5' |
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30211 | 3' | -59.5 | NC_006273.1 | + | 1916 | 0.66 | 0.822669 |
Target: 5'- uGCGGCugGCUGGCgCUGGGCgcggUGCUGc- -3' miRNA: 3'- -UGUCGugCGGUCG-GGCUCG----GCGAUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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