miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 3' -59.5 NC_006273.1 + 1916 0.66 0.822669
Target:  5'- uGCGGCugGCUGGCgCUGGGCgcggUGCUGc- -3'
miRNA:   3'- -UGUCGugCGGUCG-GGCUCG----GCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 1990 0.66 0.854109
Target:  5'- gACGuCGCGCCAGCggCGAGCgGCacgGAGa -3'
miRNA:   3'- -UGUcGUGCGGUCGg-GCUCGgCGa--UUC- -5'
30211 3' -59.5 NC_006273.1 + 2379 0.66 0.830786
Target:  5'- -gGGCGCGCUGGCgCUGGGgCGCg--- -3'
miRNA:   3'- ugUCGUGCGGUCG-GGCUCgGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 2492 0.68 0.743324
Target:  5'- uGCAcccGCGCGCCGcgcugugggcGCgCGAGCCGCa--- -3'
miRNA:   3'- -UGU---CGUGCGGU----------CGgGCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 2536 0.66 0.830786
Target:  5'- uUAGCuuuuuUGCUAcGUCCGGGCCGCggcGAGg -3'
miRNA:   3'- uGUCGu----GCGGU-CGGGCUCGGCGa--UUC- -5'
30211 3' -59.5 NC_006273.1 + 6922 0.66 0.854109
Target:  5'- uGCAGC-CGCCgAGCCCGucgacGuuGCcgAAGu -3'
miRNA:   3'- -UGUCGuGCGG-UCGGGCu----CggCGa-UUC- -5'
30211 3' -59.5 NC_006273.1 + 9893 0.67 0.797389
Target:  5'- cACGGCACGCUGGCUaggGAGuuGUgaucUAGGa -3'
miRNA:   3'- -UGUCGUGCGGUCGGg--CUCggCG----AUUC- -5'
30211 3' -59.5 NC_006273.1 + 12066 0.68 0.752607
Target:  5'- gGCAGCGCgGCUgucaccgacgGGCCCGAaacGCC-CUGGGg -3'
miRNA:   3'- -UGUCGUG-CGG----------UCGGGCU---CGGcGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 13195 0.67 0.797389
Target:  5'- aACAGCcCGCUacgGGCCCGuGCgGCg--- -3'
miRNA:   3'- -UGUCGuGCGG---UCGGGCuCGgCGauuc -5'
30211 3' -59.5 NC_006273.1 + 13575 0.68 0.752607
Target:  5'- gGguGCucaccCGCCgggcGGCCCGGGCCGCcgugcugGAGg -3'
miRNA:   3'- -UguCGu----GCGG----UCGGGCUCGGCGa------UUC- -5'
30211 3' -59.5 NC_006273.1 + 14576 0.68 0.751683
Target:  5'- -aGGCgGCGUCAaagcucaucuguuGCCgCGAGCCGCUGAc -3'
miRNA:   3'- ugUCG-UGCGGU-------------CGG-GCUCGGCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 19826 0.68 0.733952
Target:  5'- uGCAGCACGCCGGauuCCaagucaGAGCgGCg--- -3'
miRNA:   3'- -UGUCGUGCGGUC---GGg-----CUCGgCGauuc -5'
30211 3' -59.5 NC_006273.1 + 21925 0.67 0.788677
Target:  5'- uGCAGC-CGCCGGCaUCGGGUagacggCGCUAGc -3'
miRNA:   3'- -UGUCGuGCGGUCG-GGCUCG------GCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 23508 0.69 0.656718
Target:  5'- cGCGGCACGCCGuuGCCaCGAGCauggaucacgCGCUc-- -3'
miRNA:   3'- -UGUCGUGCGGU--CGG-GCUCG----------GCGAuuc -5'
30211 3' -59.5 NC_006273.1 + 23618 0.68 0.705378
Target:  5'- --cGC-CGCCgAGCCCGGGCCuGCUc-- -3'
miRNA:   3'- uguCGuGCGG-UCGGGCUCGG-CGAuuc -5'
30211 3' -59.5 NC_006273.1 + 25463 0.74 0.388945
Target:  5'- gGCAGCugGCCGGCuuGA-CCGCg--- -3'
miRNA:   3'- -UGUCGugCGGUCGggCUcGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 29768 0.72 0.483617
Target:  5'- gACGGCGCG-CAGCCCGAcGCgCGCa--- -3'
miRNA:   3'- -UGUCGUGCgGUCGGGCU-CG-GCGauuc -5'
30211 3' -59.5 NC_006273.1 + 30023 0.66 0.814393
Target:  5'- uGCAGCACuagguuCCAGCCCG-GCgGCc--- -3'
miRNA:   3'- -UGUCGUGc-----GGUCGGGCuCGgCGauuc -5'
30211 3' -59.5 NC_006273.1 + 31246 0.66 0.814393
Target:  5'- cACGGUACGCCGGgU--AGCCGCgcAGg -3'
miRNA:   3'- -UGUCGUGCGGUCgGgcUCGGCGauUC- -5'
30211 3' -59.5 NC_006273.1 + 31389 0.66 0.822669
Target:  5'- uGCGGCAuCGCgGcacGCCCGAaucGCCGCg--- -3'
miRNA:   3'- -UGUCGU-GCGgU---CGGGCU---CGGCGauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.