miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 3' -59.5 NC_006273.1 + 144148 0.7 0.597795
Target:  5'- aGCGGCACGCCGccgaagccucgcGCgCCGAGaUCGCcGAGg -3'
miRNA:   3'- -UGUCGUGCGGU------------CG-GGCUC-GGCGaUUC- -5'
30211 3' -59.5 NC_006273.1 + 81732 0.72 0.483617
Target:  5'- gGCGGC-CGCUuGCCCGAGCCcuGCgcgGAGc -3'
miRNA:   3'- -UGUCGuGCGGuCGGGCUCGG--CGa--UUC- -5'
30211 3' -59.5 NC_006273.1 + 111899 0.72 0.511335
Target:  5'- uGCAGUACGCCgagGGCCUGcGCCaGCUcAAGg -3'
miRNA:   3'- -UGUCGUGCGG---UCGGGCuCGG-CGA-UUC- -5'
30211 3' -59.5 NC_006273.1 + 33666 0.72 0.511335
Target:  5'- aGCAGCGCaGCCucgccuuuaaacAGCCUgauGAGCCGCUGc- -3'
miRNA:   3'- -UGUCGUG-CGG------------UCGGG---CUCGGCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 190924 0.72 0.51978
Target:  5'- cGCGGCuuguuauACGCUAGCCCGucGCCGCc--- -3'
miRNA:   3'- -UGUCG-------UGCGGUCGGGCu-CGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 232922 0.72 0.520721
Target:  5'- uGCAGCGCGucCCAGCgCG-GCCGCUc-- -3'
miRNA:   3'- -UGUCGUGC--GGUCGgGCuCGGCGAuuc -5'
30211 3' -59.5 NC_006273.1 + 125888 0.71 0.539689
Target:  5'- -aGGCACGCCcGCgCGGGuuGUUGGGg -3'
miRNA:   3'- ugUCGUGCGGuCGgGCUCggCGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 153623 0.71 0.57827
Target:  5'- gACAGCGcCGUUAGCCaCGAGaCGCUGGa -3'
miRNA:   3'- -UGUCGU-GCGGUCGG-GCUCgGCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 213907 0.71 0.57827
Target:  5'- gGCGGCAUGagccaCCAG-CUGAGCaCGCUGAGg -3'
miRNA:   3'- -UGUCGUGC-----GGUCgGGCUCG-GCGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 29768 0.72 0.483617
Target:  5'- gACGGCGCG-CAGCCCGAcGCgCGCa--- -3'
miRNA:   3'- -UGUCGUGCgGUCGGGCU-CG-GCGauuc -5'
30211 3' -59.5 NC_006273.1 + 143410 0.73 0.44783
Target:  5'- -aAGCACGCCGGCgCGGccuGCCGCgcguugGAGa -3'
miRNA:   3'- ugUCGUGCGGUCGgGCU---CGGCGa-----UUC- -5'
30211 3' -59.5 NC_006273.1 + 102836 0.73 0.446954
Target:  5'- -aGGCGCGCCGGCCgcguccaCGGGCaCGCUGu- -3'
miRNA:   3'- ugUCGUGCGGUCGG-------GCUCG-GCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 221798 0.83 0.107087
Target:  5'- cCAGCACGgCGGCCCGGGCCGCc--- -3'
miRNA:   3'- uGUCGUGCgGUCGGGCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 45888 0.78 0.239365
Target:  5'- cACAGCGCGgCGG-CCGGGCCGCcGAGg -3'
miRNA:   3'- -UGUCGUGCgGUCgGGCUCGGCGaUUC- -5'
30211 3' -59.5 NC_006273.1 + 65565 0.78 0.239365
Target:  5'- uGCGGCGaaggggcccUGCCGGCCCuGGGCCGCUAc- -3'
miRNA:   3'- -UGUCGU---------GCGGUCGGG-CUCGGCGAUuc -5'
30211 3' -59.5 NC_006273.1 + 38183 0.76 0.307265
Target:  5'- gGCGGgACGCCgAGCCCGcGCCGCg--- -3'
miRNA:   3'- -UGUCgUGCGG-UCGGGCuCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 221287 0.74 0.373077
Target:  5'- aACAGC-CGgCGGUCCGAGCCaCUGAGc -3'
miRNA:   3'- -UGUCGuGCgGUCGGGCUCGGcGAUUC- -5'
30211 3' -59.5 NC_006273.1 + 104600 0.74 0.413561
Target:  5'- uGCAGCugGCCcagcGCCugugCGAGCUGCUGAu -3'
miRNA:   3'- -UGUCGugCGGu---CGG----GCUCGGCGAUUc -5'
30211 3' -59.5 NC_006273.1 + 142355 0.74 0.413561
Target:  5'- gACAGCGCcgugGCaucgGGCCCGGGCCGCg--- -3'
miRNA:   3'- -UGUCGUG----CGg---UCGGGCUCGGCGauuc -5'
30211 3' -59.5 NC_006273.1 + 57856 0.73 0.430496
Target:  5'- uACAGcCGCGCCgAGCCagCGGGCCcccGCUAAGa -3'
miRNA:   3'- -UGUC-GUGCGG-UCGG--GCUCGG---CGAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.