miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 5' -57.6 NC_006273.1 + 155146 0.66 0.918945
Target:  5'- uCCCCUGCCuGUCCAaccaccaugacgACUcGGACGC-CAUc -3'
miRNA:   3'- -GGGGACGG-CGGGU------------UGA-CUUGUGcGUA- -5'
30211 5' -57.6 NC_006273.1 + 199000 0.66 0.918945
Target:  5'- aCCCCUGCCaguGCUCucGCUcGAGCAC-CAc -3'
miRNA:   3'- -GGGGACGG---CGGGu-UGA-CUUGUGcGUa -5'
30211 5' -57.6 NC_006273.1 + 83885 0.66 0.918395
Target:  5'- aCCCUGCCcuaucuguGUCaCAuccuggcGCUGGGCACGCu- -3'
miRNA:   3'- gGGGACGG--------CGG-GU-------UGACUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 41791 0.66 0.913344
Target:  5'- gCCCUGCCacGCCCAACgcGGCACu--- -3'
miRNA:   3'- gGGGACGG--CGGGUUGacUUGUGcgua -5'
30211 5' -57.6 NC_006273.1 + 46594 0.66 0.913344
Target:  5'- gUCCCUGUC-CCCGACcccGCACGCc- -3'
miRNA:   3'- -GGGGACGGcGGGUUGacuUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 204199 0.66 0.907521
Target:  5'- gCCUggacGCCGgCCGGCaaugGAGCACGCu- -3'
miRNA:   3'- gGGGa---CGGCgGGUUGa---CUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 215894 0.66 0.907521
Target:  5'- gCCUguccGCCGCgCCAGCUG-GCACGgAg -3'
miRNA:   3'- gGGGa---CGGCG-GGUUGACuUGUGCgUa -5'
30211 5' -57.6 NC_006273.1 + 149356 0.66 0.907521
Target:  5'- cCCaCCUGUCGUguUCAAgaGAGCGCGCc- -3'
miRNA:   3'- -GG-GGACGGCG--GGUUgaCUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 163895 0.66 0.907521
Target:  5'- aCCCggUGCUGgCCAccauGCUGAgcaaguauACGCGCAUg -3'
miRNA:   3'- gGGG--ACGGCgGGU----UGACU--------UGUGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 68252 0.66 0.907521
Target:  5'- aCCUacauuuUGCCGgCCGACUGucgguACGCGCc- -3'
miRNA:   3'- gGGG------ACGGCgGGUUGACu----UGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 213104 0.66 0.907521
Target:  5'- aCCgCUGCCGCagaugagcgcaCCGACggcgGAGC-CGCGUc -3'
miRNA:   3'- -GGgGACGGCG-----------GGUUGa---CUUGuGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 59071 0.66 0.906926
Target:  5'- gCCgCCgggagacagGCCGCCCAaacagcgaguagcGCUGcuCACGCGc -3'
miRNA:   3'- -GG-GGa--------CGGCGGGU-------------UGACuuGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 198640 0.66 0.901477
Target:  5'- aCCC-GCCggaGCCCGGuCUGAGCuccgACGCAg -3'
miRNA:   3'- gGGGaCGG---CGGGUU-GACUUG----UGCGUa -5'
30211 5' -57.6 NC_006273.1 + 140677 0.66 0.901477
Target:  5'- uCCCCgGUCGCCCAccGCgGAACGaGCc- -3'
miRNA:   3'- -GGGGaCGGCGGGU--UGaCUUGUgCGua -5'
30211 5' -57.6 NC_006273.1 + 129126 0.66 0.895214
Target:  5'- -gCC-GCCGCCCAAC-GAACAC-CGUu -3'
miRNA:   3'- ggGGaCGGCGGGUUGaCUUGUGcGUA- -5'
30211 5' -57.6 NC_006273.1 + 141160 0.67 0.891353
Target:  5'- aCCCUGCCG-CgGACUGcgccggggggcggcgGGCACGCc- -3'
miRNA:   3'- gGGGACGGCgGgUUGAC---------------UUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 219418 0.67 0.888736
Target:  5'- cUCCCUGUgGCCC----GGACACGUAg -3'
miRNA:   3'- -GGGGACGgCGGGuugaCUUGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 108100 0.67 0.888736
Target:  5'- -aCCUGCCGCgUAACaugGAAgGCGUAc -3'
miRNA:   3'- ggGGACGGCGgGUUGa--CUUgUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 153347 0.67 0.882045
Target:  5'- gCCgCUGCCGCuucguccgaggCCGGCgGcACGCGCGUg -3'
miRNA:   3'- -GGgGACGGCG-----------GGUUGaCuUGUGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 95809 0.67 0.882045
Target:  5'- gCCgCUGCCGCCUAACcuccGCuCGCAc -3'
miRNA:   3'- -GGgGACGGCGGGUUGacu-UGuGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.