Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30211 | 5' | -57.6 | NC_006273.1 | + | 198950 | 1.08 | 0.003687 |
Target: 5'- gCCCCUGCCGCCCAACUGAACACGCAUa -3' miRNA: 3'- -GGGGACGGCGGGUUGACUUGUGCGUA- -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 70468 | 0.77 | 0.368681 |
Target: 5'- gCCggaCUGCCGCCCgAGCUGAagcagACGCGCGUc -3' miRNA: 3'- -GGg--GACGGCGGG-UUGACU-----UGUGCGUA- -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 73147 | 0.77 | 0.368681 |
Target: 5'- gCCgCUGCCaCCCAACgaGGACACGCAg -3' miRNA: 3'- -GGgGACGGcGGGUUGa-CUUGUGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 45248 | 0.76 | 0.392667 |
Target: 5'- gCCCgUGCCGCCCGgcgGCUGcuCGCGCc- -3' miRNA: 3'- -GGGgACGGCGGGU---UGACuuGUGCGua -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 47008 | 0.75 | 0.461342 |
Target: 5'- uCCCCgacGCCGCCCGACUugGAugACcGCGg -3' miRNA: 3'- -GGGGa--CGGCGGGUUGA--CUugUG-CGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 221809 | 0.74 | 0.488688 |
Target: 5'- gCCCggGCCGCCCGGCgggUGAGCACccgGCGUu -3' miRNA: 3'- gGGGa-CGGCGGGUUG---ACUUGUG---CGUA- -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 175377 | 0.73 | 0.526277 |
Target: 5'- --gCUGCCGUCCGACagGAACGCGCu- -3' miRNA: 3'- gggGACGGCGGGUUGa-CUUGUGCGua -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 160696 | 0.73 | 0.526277 |
Target: 5'- uCUgUUGCUGCCCucuCUGGACGCGCGc -3' miRNA: 3'- -GGgGACGGCGGGuu-GACUUGUGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 59395 | 0.73 | 0.555165 |
Target: 5'- aCaugGCCGCCCAACUGGcguCACGCGa -3' miRNA: 3'- gGggaCGGCGGGUUGACUu--GUGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 224515 | 0.73 | 0.555165 |
Target: 5'- -aCCUGgCGCCCAucguGCUGAugGCGUAc -3' miRNA: 3'- ggGGACgGCGGGU----UGACUugUGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 95198 | 0.73 | 0.574681 |
Target: 5'- cCCCCaucgGCCGCCCAGCcgGggUcgGCGCc- -3' miRNA: 3'- -GGGGa---CGGCGGGUUGa-CuuG--UGCGua -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 74584 | 0.73 | 0.574681 |
Target: 5'- gCCCCaauccGCCGCCCAACU--GCGCGUc- -3' miRNA: 3'- -GGGGa----CGGCGGGUUGAcuUGUGCGua -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 206175 | 0.71 | 0.653763 |
Target: 5'- cCUCCagucGaCCGCCCGAUcgGAGCACGCAg -3' miRNA: 3'- -GGGGa---C-GGCGGGUUGa-CUUGUGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 133020 | 0.71 | 0.673515 |
Target: 5'- aCCCgcuaggcuuugUGCgCGCCCAACUGGAUcuGCGUAa -3' miRNA: 3'- gGGG-----------ACG-GCGGGUUGACUUG--UGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 197326 | 0.71 | 0.683348 |
Target: 5'- --gCUGCUGCCCgAGCUGGAC-CGCGa -3' miRNA: 3'- gggGACGGCGGG-UUGACUUGuGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 2433 | 0.71 | 0.683348 |
Target: 5'- --gCUGCUGCCCgAGCUGGAC-CGCGa -3' miRNA: 3'- gggGACGGCGGG-UUGACUUGuGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 200862 | 0.71 | 0.693141 |
Target: 5'- gCCCUUGCCGCCCGAUcc-GCA-GCAUu -3' miRNA: 3'- -GGGGACGGCGGGUUGacuUGUgCGUA- -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 167753 | 0.71 | 0.693141 |
Target: 5'- gUCCUGcCCGUCCGGggGAAUACGCAa -3' miRNA: 3'- gGGGAC-GGCGGGUUgaCUUGUGCGUa -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 35078 | 0.7 | 0.731753 |
Target: 5'- cCCCCgUGCCGCUCAcGCUauccAGCACGCu- -3' miRNA: 3'- -GGGG-ACGGCGGGU-UGAc---UUGUGCGua -5' |
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30211 | 5' | -57.6 | NC_006273.1 | + | 33375 | 0.7 | 0.731753 |
Target: 5'- uCCCCgUGUCGCagcgagugCCAgaguaggcGCUGGACGCGCAc -3' miRNA: 3'- -GGGG-ACGGCG--------GGU--------UGACUUGUGCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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