miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 5' -57.6 NC_006273.1 + 65577 0.67 0.875147
Target:  5'- gCCCUGCCGgCC--CUGGGC-CGCu- -3'
miRNA:   3'- gGGGACGGCgGGuuGACUUGuGCGua -5'
30211 5' -57.6 NC_006273.1 + 90747 0.67 0.875147
Target:  5'- -aCC-GCUGCCCuGCuUGAGCACGCc- -3'
miRNA:   3'- ggGGaCGGCGGGuUG-ACUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 148793 0.67 0.868044
Target:  5'- aUCCCgaaucaggGCCGCUC-GCUGAACAaGCGg -3'
miRNA:   3'- -GGGGa-------CGGCGGGuUGACUUGUgCGUa -5'
30211 5' -57.6 NC_006273.1 + 19162 0.67 0.868044
Target:  5'- uUCC-GCCGCCCAugUGc-CGCGCu- -3'
miRNA:   3'- gGGGaCGGCGGGUugACuuGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 2168 0.67 0.868044
Target:  5'- uCCCCgaaacuacGCCGUCCAACUu--CACGCc- -3'
miRNA:   3'- -GGGGa-------CGGCGGGUUGAcuuGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 21443 0.67 0.860002
Target:  5'- aCCUCUGCUacugGCCCGagaucgugcguucGCUGGugguggacGCACGCAg -3'
miRNA:   3'- -GGGGACGG----CGGGU-------------UGACU--------UGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 213898 0.67 0.853247
Target:  5'- gCCaCCggugGCgGCaugagccaCCAGCUGAGCACGCu- -3'
miRNA:   3'- -GG-GGa---CGgCG--------GGUUGACUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 46397 0.68 0.845564
Target:  5'- aCCCgcGCCGCgUAAgaacCUGAGCACGCc- -3'
miRNA:   3'- gGGGa-CGGCGgGUU----GACUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 149657 0.68 0.837699
Target:  5'- cUCCCUccacGCCGCCCGcggcguuaggugGCUGuugcuGCGCGCc- -3'
miRNA:   3'- -GGGGA----CGGCGGGU------------UGACu----UGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 34222 0.68 0.829659
Target:  5'- cCCCCUGCaCGUCCAugUcgcGACACGa-- -3'
miRNA:   3'- -GGGGACG-GCGGGUugAc--UUGUGCgua -5'
30211 5' -57.6 NC_006273.1 + 132507 0.68 0.829659
Target:  5'- aCCgCC-GCCGCCCGACgccGAAgACGaCGUg -3'
miRNA:   3'- -GG-GGaCGGCGGGUUGa--CUUgUGC-GUA- -5'
30211 5' -57.6 NC_006273.1 + 112802 0.68 0.82145
Target:  5'- -aCCUGCUGCCCA--UGcGACugGCGUc -3'
miRNA:   3'- ggGGACGGCGGGUugAC-UUGugCGUA- -5'
30211 5' -57.6 NC_006273.1 + 93961 0.68 0.82145
Target:  5'- gCCCUGCgcaugCGCCgGuaaaauuccACUGGGCAUGCAUc -3'
miRNA:   3'- gGGGACG-----GCGGgU---------UGACUUGUGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 46457 0.68 0.804554
Target:  5'- aCCCaaGCCGgUCGGCUGGACAcCGCc- -3'
miRNA:   3'- -GGGgaCGGCgGGUUGACUUGU-GCGua -5'
30211 5' -57.6 NC_006273.1 + 13595 0.68 0.804554
Target:  5'- gCCCggGCCGCCguGCUGGAgggccgcccCACGCc- -3'
miRNA:   3'- gGGGa-CGGCGGguUGACUU---------GUGCGua -5'
30211 5' -57.6 NC_006273.1 + 144395 0.69 0.795883
Target:  5'- cUCUUUGCCGgUCAGCUGAuucCAUGCGUg -3'
miRNA:   3'- -GGGGACGGCgGGUUGACUu--GUGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 86654 0.69 0.778132
Target:  5'- uCCUCggGCaCGCCgAGCgaGAGCGCGCAg -3'
miRNA:   3'- -GGGGa-CG-GCGGgUUGa-CUUGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 85469 0.69 0.778132
Target:  5'- gCCCUGCUcgGCCCAcACgccguggaaGGGCGCGCAa -3'
miRNA:   3'- gGGGACGG--CGGGU-UGa--------CUUGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 113534 0.69 0.769068
Target:  5'- gCgCUGCCGCUCAagauGCUGAACAUccccaGCAUc -3'
miRNA:   3'- gGgGACGGCGGGU----UGACUUGUG-----CGUA- -5'
30211 5' -57.6 NC_006273.1 + 183385 0.69 0.769068
Target:  5'- uUCCUGgCGCCCAGC--AugGCGCAg -3'
miRNA:   3'- gGGGACgGCGGGUUGacUugUGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.