miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 5' -57.6 NC_006273.1 + 2168 0.67 0.868044
Target:  5'- uCCCCgaaacuacGCCGUCCAACUu--CACGCc- -3'
miRNA:   3'- -GGGGa-------CGGCGGGUUGAcuuGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 2433 0.71 0.683348
Target:  5'- --gCUGCUGCCCgAGCUGGAC-CGCGa -3'
miRNA:   3'- gggGACGGCGGG-UUGACUUGuGCGUa -5'
30211 5' -57.6 NC_006273.1 + 13595 0.68 0.804554
Target:  5'- gCCCggGCCGCCguGCUGGAgggccgcccCACGCc- -3'
miRNA:   3'- gGGGa-CGGCGGguUGACUU---------GUGCGua -5'
30211 5' -57.6 NC_006273.1 + 19162 0.67 0.868044
Target:  5'- uUCC-GCCGCCCAugUGc-CGCGCu- -3'
miRNA:   3'- gGGGaCGGCGGGUugACuuGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 21443 0.67 0.860002
Target:  5'- aCCUCUGCUacugGCCCGagaucgugcguucGCUGGugguggacGCACGCAg -3'
miRNA:   3'- -GGGGACGG----CGGGU-------------UGACU--------UGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 33375 0.7 0.731753
Target:  5'- uCCCCgUGUCGCagcgagugCCAgaguaggcGCUGGACGCGCAc -3'
miRNA:   3'- -GGGG-ACGGCG--------GGU--------UGACUUGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 34222 0.68 0.829659
Target:  5'- cCCCCUGCaCGUCCAugUcgcGACACGa-- -3'
miRNA:   3'- -GGGGACG-GCGGGUugAc--UUGUGCgua -5'
30211 5' -57.6 NC_006273.1 + 35078 0.7 0.731753
Target:  5'- cCCCCgUGCCGCUCAcGCUauccAGCACGCu- -3'
miRNA:   3'- -GGGG-ACGGCGGGU-UGAc---UUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 41791 0.66 0.913344
Target:  5'- gCCCUGCCacGCCCAACgcGGCACu--- -3'
miRNA:   3'- gGGGACGG--CGGGUUGacUUGUGcgua -5'
30211 5' -57.6 NC_006273.1 + 45248 0.76 0.392667
Target:  5'- gCCCgUGCCGCCCGgcgGCUGcuCGCGCc- -3'
miRNA:   3'- -GGGgACGGCGGGU---UGACuuGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 46397 0.68 0.845564
Target:  5'- aCCCgcGCCGCgUAAgaacCUGAGCACGCc- -3'
miRNA:   3'- gGGGa-CGGCGgGUU----GACUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 46457 0.68 0.804554
Target:  5'- aCCCaaGCCGgUCGGCUGGACAcCGCc- -3'
miRNA:   3'- -GGGgaCGGCgGGUUGACUUGU-GCGua -5'
30211 5' -57.6 NC_006273.1 + 46594 0.66 0.913344
Target:  5'- gUCCCUGUC-CCCGACcccGCACGCc- -3'
miRNA:   3'- -GGGGACGGcGGGUUGacuUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 47008 0.75 0.461342
Target:  5'- uCCCCgacGCCGCCCGACUugGAugACcGCGg -3'
miRNA:   3'- -GGGGa--CGGCGGGUUGA--CUugUG-CGUa -5'
30211 5' -57.6 NC_006273.1 + 59071 0.66 0.906926
Target:  5'- gCCgCCgggagacagGCCGCCCAaacagcgaguagcGCUGcuCACGCGc -3'
miRNA:   3'- -GG-GGa--------CGGCGGGU-------------UGACuuGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 59395 0.73 0.555165
Target:  5'- aCaugGCCGCCCAACUGGcguCACGCGa -3'
miRNA:   3'- gGggaCGGCGGGUUGACUu--GUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 65577 0.67 0.875147
Target:  5'- gCCCUGCCGgCC--CUGGGC-CGCu- -3'
miRNA:   3'- gGGGACGGCgGGuuGACUUGuGCGua -5'
30211 5' -57.6 NC_006273.1 + 68252 0.66 0.907521
Target:  5'- aCCUacauuuUGCCGgCCGACUGucgguACGCGCc- -3'
miRNA:   3'- gGGG------ACGGCgGGUUGACu----UGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 70468 0.77 0.368681
Target:  5'- gCCggaCUGCCGCCCgAGCUGAagcagACGCGCGUc -3'
miRNA:   3'- -GGg--GACGGCGGG-UUGACU-----UGUGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 73147 0.77 0.368681
Target:  5'- gCCgCUGCCaCCCAACgaGGACACGCAg -3'
miRNA:   3'- -GGgGACGGcGGGUUGa-CUUGUGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.