miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30211 5' -57.6 NC_006273.1 + 198640 0.66 0.901477
Target:  5'- aCCC-GCCggaGCCCGGuCUGAGCuccgACGCAg -3'
miRNA:   3'- gGGGaCGG---CGGGUU-GACUUG----UGCGUa -5'
30211 5' -57.6 NC_006273.1 + 93961 0.68 0.82145
Target:  5'- gCCCUGCgcaugCGCCgGuaaaauuccACUGGGCAUGCAUc -3'
miRNA:   3'- gGGGACG-----GCGGgU---------UGACUUGUGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 132507 0.68 0.829659
Target:  5'- aCCgCC-GCCGCCCGACgccGAAgACGaCGUg -3'
miRNA:   3'- -GG-GGaCGGCGGGUUGa--CUUgUGC-GUA- -5'
30211 5' -57.6 NC_006273.1 + 149657 0.68 0.837699
Target:  5'- cUCCCUccacGCCGCCCGcggcguuaggugGCUGuugcuGCGCGCc- -3'
miRNA:   3'- -GGGGA----CGGCGGGU------------UGACu----UGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 213898 0.67 0.853247
Target:  5'- gCCaCCggugGCgGCaugagccaCCAGCUGAGCACGCu- -3'
miRNA:   3'- -GG-GGa---CGgCG--------GGUUGACUUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 21443 0.67 0.860002
Target:  5'- aCCUCUGCUacugGCCCGagaucgugcguucGCUGGugguggacGCACGCAg -3'
miRNA:   3'- -GGGGACGG----CGGGU-------------UGACU--------UGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 2168 0.67 0.868044
Target:  5'- uCCCCgaaacuacGCCGUCCAACUu--CACGCc- -3'
miRNA:   3'- -GGGGa-------CGGCGGGUUGAcuuGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 65577 0.67 0.875147
Target:  5'- gCCCUGCCGgCC--CUGGGC-CGCu- -3'
miRNA:   3'- gGGGACGGCgGGuuGACUUGuGCGua -5'
30211 5' -57.6 NC_006273.1 + 153347 0.67 0.882045
Target:  5'- gCCgCUGCCGCuucguccgaggCCGGCgGcACGCGCGUg -3'
miRNA:   3'- -GGgGACGGCG-----------GGUUGaCuUGUGCGUA- -5'
30211 5' -57.6 NC_006273.1 + 35078 0.7 0.731753
Target:  5'- cCCCCgUGCCGCUCAcGCUauccAGCACGCu- -3'
miRNA:   3'- -GGGG-ACGGCGGGU-UGAc---UUGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 137189 0.7 0.731753
Target:  5'- gCCgCUGCCGCUCAGC-GAGCucgucgccaGCGCGa -3'
miRNA:   3'- -GGgGACGGCGGGUUGaCUUG---------UGCGUa -5'
30211 5' -57.6 NC_006273.1 + 33375 0.7 0.731753
Target:  5'- uCCCCgUGUCGCagcgagugCCAgaguaggcGCUGGACGCGCAc -3'
miRNA:   3'- -GGGG-ACGGCG--------GGU--------UGACUUGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 45248 0.76 0.392667
Target:  5'- gCCCgUGCCGCCCGgcgGCUGcuCGCGCc- -3'
miRNA:   3'- -GGGgACGGCGGGU---UGACuuGUGCGua -5'
30211 5' -57.6 NC_006273.1 + 221809 0.74 0.488688
Target:  5'- gCCCggGCCGCCCGGCgggUGAGCACccgGCGUu -3'
miRNA:   3'- gGGGa-CGGCGGGUUG---ACUUGUG---CGUA- -5'
30211 5' -57.6 NC_006273.1 + 59395 0.73 0.555165
Target:  5'- aCaugGCCGCCCAACUGGcguCACGCGa -3'
miRNA:   3'- gGggaCGGCGGGUUGACUu--GUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 224515 0.73 0.555165
Target:  5'- -aCCUGgCGCCCAucguGCUGAugGCGUAc -3'
miRNA:   3'- ggGGACgGCGGGU----UGACUugUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 95198 0.73 0.574681
Target:  5'- cCCCCaucgGCCGCCCAGCcgGggUcgGCGCc- -3'
miRNA:   3'- -GGGGa---CGGCGGGUUGa-CuuG--UGCGua -5'
30211 5' -57.6 NC_006273.1 + 206175 0.71 0.653763
Target:  5'- cCUCCagucGaCCGCCCGAUcgGAGCACGCAg -3'
miRNA:   3'- -GGGGa---C-GGCGGGUUGa-CUUGUGCGUa -5'
30211 5' -57.6 NC_006273.1 + 197326 0.71 0.683348
Target:  5'- --gCUGCUGCCCgAGCUGGAC-CGCGa -3'
miRNA:   3'- gggGACGGCGGG-UUGACUUGuGCGUa -5'
30211 5' -57.6 NC_006273.1 + 167753 0.71 0.693141
Target:  5'- gUCCUGcCCGUCCGGggGAAUACGCAa -3'
miRNA:   3'- gGGGAC-GGCGGGUUgaCUUGUGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.