Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30212 | 3' | -59.2 | NC_006273.1 | + | 194783 | 0.66 | 0.896398 |
Target: 5'- gGCCGGG-GCagCCGcGUCgGUGUUCCu -3' miRNA: 3'- -UGGCCCgCGgaGGCuCAGgUAUAGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 57696 | 0.66 | 0.892026 |
Target: 5'- aGCCGcagcgccagcgucGGCGgCUCCGAGaggcgcgucuugcgaUCCA--UCCCg -3' miRNA: 3'- -UGGC-------------CCGCgGAGGCUC---------------AGGUauAGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 114545 | 0.66 | 0.890122 |
Target: 5'- cACgCGGcCGCCUuaaggCCGAGUCCAccgucgcgCCCg -3' miRNA: 3'- -UG-GCCcGCGGA-----GGCUCAGGUaua-----GGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 49972 | 0.66 | 0.883644 |
Target: 5'- aGCCGGGUGCCgcauuccugcUCCagaaagucguuGAGaCCGUugaaGUCCCc -3' miRNA: 3'- -UGGCCCGCGG----------AGG-----------CUCaGGUA----UAGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 13586 | 0.66 | 0.876966 |
Target: 5'- cGCCGGGCGgC-CCGGGccgCCGUGcuggagggccgCCCc -3' miRNA: 3'- -UGGCCCGCgGaGGCUCa--GGUAUa----------GGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 184679 | 0.66 | 0.876288 |
Target: 5'- cACUGGcGCGCa--CGAGUCCGUuugagucAUCCg -3' miRNA: 3'- -UGGCC-CGCGgagGCUCAGGUA-------UAGGg -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 31795 | 0.66 | 0.870094 |
Target: 5'- cCCGGaGUGCCUcguggagaccaCCGAagCCGUAUUCCg -3' miRNA: 3'- uGGCC-CGCGGA-----------GGCUcaGGUAUAGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 234592 | 0.66 | 0.870094 |
Target: 5'- cACgCGGaCGgCUCCGucGUCCGUGUgCCa -3' miRNA: 3'- -UG-GCCcGCgGAGGCu-CAGGUAUAgGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 39700 | 0.66 | 0.870094 |
Target: 5'- cACgCGGaCGgCUCCGucGUCCGUGUgCCa -3' miRNA: 3'- -UG-GCCcGCgGAGGCu-CAGGUAUAgGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 147945 | 0.66 | 0.86303 |
Target: 5'- aGCCGGuCaUCUCCGAGcccCCGUcgCCCg -3' miRNA: 3'- -UGGCCcGcGGAGGCUCa--GGUAuaGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 116256 | 0.66 | 0.86303 |
Target: 5'- -gCGcGGCGCCgucUCCGAGUUUc--UCCCg -3' miRNA: 3'- ugGC-CCGCGG---AGGCUCAGGuauAGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 173707 | 0.66 | 0.86303 |
Target: 5'- -aCGGuauuuaaCGCCUCCGcuuuGUCCGUggCCCg -3' miRNA: 3'- ugGCCc------GCGGAGGCu---CAGGUAuaGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 137631 | 0.67 | 0.855781 |
Target: 5'- uCCGGGaCGUCUugCCGucGUCCGUcaCCCg -3' miRNA: 3'- uGGCCC-GCGGA--GGCu-CAGGUAuaGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 65189 | 0.67 | 0.855781 |
Target: 5'- cAUCGGGuCGUCUcacCCGAGUCCugGUCUUu -3' miRNA: 3'- -UGGCCC-GCGGA---GGCUCAGGuaUAGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 151980 | 0.67 | 0.853571 |
Target: 5'- cGCuCGGGCGCCgCCGGG-CCGgGUggcggcggcagcagCCCg -3' miRNA: 3'- -UG-GCCCGCGGaGGCUCaGGUaUA--------------GGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 205276 | 0.67 | 0.848352 |
Target: 5'- aGCCuGGCGCUcacggCCGAGUUCGg--CCUg -3' miRNA: 3'- -UGGcCCGCGGa----GGCUCAGGUauaGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 139944 | 0.67 | 0.848352 |
Target: 5'- cGCUGGuG-GCCUgCGAGgCCGUGUCaCCu -3' miRNA: 3'- -UGGCC-CgCGGAgGCUCaGGUAUAG-GG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 38770 | 0.67 | 0.840748 |
Target: 5'- cGCCGGcGCaGCUcccgUCCGAGcgCCGUcgCCUc -3' miRNA: 3'- -UGGCC-CG-CGG----AGGCUCa-GGUAuaGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 2288 | 0.67 | 0.840748 |
Target: 5'- aGCUGGGCGCCgugUUCGGGUaCUg---CCCg -3' miRNA: 3'- -UGGCCCGCGG---AGGCUCA-GGuauaGGG- -5' |
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30212 | 3' | -59.2 | NC_006273.1 | + | 197181 | 0.67 | 0.840748 |
Target: 5'- aGCUGGGCGCCgugUUCGGGUaCUg---CCCg -3' miRNA: 3'- -UGGCCCGCGG---AGGCUCA-GGuauaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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