miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30212 3' -59.2 NC_006273.1 + 234592 0.66 0.870094
Target:  5'- cACgCGGaCGgCUCCGucGUCCGUGUgCCa -3'
miRNA:   3'- -UG-GCCcGCgGAGGCu-CAGGUAUAgGG- -5'
30212 3' -59.2 NC_006273.1 + 173707 0.66 0.86303
Target:  5'- -aCGGuauuuaaCGCCUCCGcuuuGUCCGUggCCCg -3'
miRNA:   3'- ugGCCc------GCGGAGGCu---CAGGUAuaGGG- -5'
30212 3' -59.2 NC_006273.1 + 39700 0.66 0.870094
Target:  5'- cACgCGGaCGgCUCCGucGUCCGUGUgCCa -3'
miRNA:   3'- -UG-GCCcGCgGAGGCu-CAGGUAUAgGG- -5'
30212 3' -59.2 NC_006273.1 + 31795 0.66 0.870094
Target:  5'- cCCGGaGUGCCUcguggagaccaCCGAagCCGUAUUCCg -3'
miRNA:   3'- uGGCC-CGCGGA-----------GGCUcaGGUAUAGGG- -5'
30212 3' -59.2 NC_006273.1 + 184679 0.66 0.876288
Target:  5'- cACUGGcGCGCa--CGAGUCCGUuugagucAUCCg -3'
miRNA:   3'- -UGGCC-CGCGgagGCUCAGGUA-------UAGGg -5'
30212 3' -59.2 NC_006273.1 + 13586 0.66 0.876966
Target:  5'- cGCCGGGCGgC-CCGGGccgCCGUGcuggagggccgCCCc -3'
miRNA:   3'- -UGGCCCGCgGaGGCUCa--GGUAUa----------GGG- -5'
30212 3' -59.2 NC_006273.1 + 114545 0.66 0.890122
Target:  5'- cACgCGGcCGCCUuaaggCCGAGUCCAccgucgcgCCCg -3'
miRNA:   3'- -UG-GCCcGCGGA-----GGCUCAGGUaua-----GGG- -5'
30212 3' -59.2 NC_006273.1 + 147945 0.66 0.86303
Target:  5'- aGCCGGuCaUCUCCGAGcccCCGUcgCCCg -3'
miRNA:   3'- -UGGCCcGcGGAGGCUCa--GGUAuaGGG- -5'
30212 3' -59.2 NC_006273.1 + 57696 0.66 0.892026
Target:  5'- aGCCGcagcgccagcgucGGCGgCUCCGAGaggcgcgucuugcgaUCCA--UCCCg -3'
miRNA:   3'- -UGGC-------------CCGCgGAGGCUC---------------AGGUauAGGG- -5'
30212 3' -59.2 NC_006273.1 + 194783 0.66 0.896398
Target:  5'- gGCCGGG-GCagCCGcGUCgGUGUUCCu -3'
miRNA:   3'- -UGGCCCgCGgaGGCuCAGgUAUAGGG- -5'
30212 3' -59.2 NC_006273.1 + 49972 0.66 0.883644
Target:  5'- aGCCGGGUGCCgcauuccugcUCCagaaagucguuGAGaCCGUugaaGUCCCc -3'
miRNA:   3'- -UGGCCCGCGG----------AGG-----------CUCaGGUA----UAGGG- -5'
30212 3' -59.2 NC_006273.1 + 116256 0.66 0.86303
Target:  5'- -gCGcGGCGCCgucUCCGAGUUUc--UCCCg -3'
miRNA:   3'- ugGC-CCGCGG---AGGCUCAGGuauAGGG- -5'
30212 3' -59.2 NC_006273.1 + 123352 0.67 0.825037
Target:  5'- -gUGGGCGUCagaUCCGcGUCCGUugAUUCCg -3'
miRNA:   3'- ugGCCCGCGG---AGGCuCAGGUA--UAGGG- -5'
30212 3' -59.2 NC_006273.1 + 94322 0.67 0.816943
Target:  5'- gGCCGaGGC-CCggcgCCG-GUCCGUccgcgggcccGUCCCa -3'
miRNA:   3'- -UGGC-CCGcGGa---GGCuCAGGUA----------UAGGG- -5'
30212 3' -59.2 NC_006273.1 + 205276 0.67 0.848352
Target:  5'- aGCCuGGCGCUcacggCCGAGUUCGg--CCUg -3'
miRNA:   3'- -UGGcCCGCGGa----GGCUCAGGUauaGGG- -5'
30212 3' -59.2 NC_006273.1 + 38483 0.67 0.832974
Target:  5'- cGCCGGcG-GCCUCCGucUCCGUG-CCg -3'
miRNA:   3'- -UGGCC-CgCGGAGGCucAGGUAUaGGg -5'
30212 3' -59.2 NC_006273.1 + 137631 0.67 0.855781
Target:  5'- uCCGGGaCGUCUugCCGucGUCCGUcaCCCg -3'
miRNA:   3'- uGGCCC-GCGGA--GGCu-CAGGUAuaGGG- -5'
30212 3' -59.2 NC_006273.1 + 38770 0.67 0.840748
Target:  5'- cGCCGGcGCaGCUcccgUCCGAGcgCCGUcgCCUc -3'
miRNA:   3'- -UGGCC-CG-CGG----AGGCUCa-GGUAuaGGG- -5'
30212 3' -59.2 NC_006273.1 + 211590 0.67 0.816943
Target:  5'- uGCCGGauccgacaucaGUGgCUCUGAGUCC---UCCCg -3'
miRNA:   3'- -UGGCC-----------CGCgGAGGCUCAGGuauAGGG- -5'
30212 3' -59.2 NC_006273.1 + 65189 0.67 0.855781
Target:  5'- cAUCGGGuCGUCUcacCCGAGUCCugGUCUUu -3'
miRNA:   3'- -UGGCCC-GCGGA---GGCUCAGGuaUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.