miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30212 3' -59.2 NC_006273.1 + 233662 0.67 0.840748
Target:  5'- cGCCGGcGCaGCUcccgUCCGAGcgCCGUcgCCUc -3'
miRNA:   3'- -UGGCC-CG-CGG----AGGCUCa-GGUAuaGGG- -5'
30212 3' -59.2 NC_006273.1 + 38483 0.67 0.832974
Target:  5'- cGCCGGcG-GCCUCCGucUCCGUG-CCg -3'
miRNA:   3'- -UGGCC-CgCGGAGGCucAGGUAUaGGg -5'
30212 3' -59.2 NC_006273.1 + 233376 0.67 0.832974
Target:  5'- cGCCGGcG-GCCUCCGucUCCGUG-CCg -3'
miRNA:   3'- -UGGCC-CgCGGAGGCucAGGUAUaGGg -5'
30212 3' -59.2 NC_006273.1 + 86737 0.67 0.832974
Target:  5'- uCCaGGCcgGCCUCCGGcgCCAggAUCCCg -3'
miRNA:   3'- uGGcCCG--CGGAGGCUcaGGUa-UAGGG- -5'
30212 3' -59.2 NC_006273.1 + 101184 0.67 0.825037
Target:  5'- gGCCGuaGGCGCCUaCCGAcaCCAguuUCUCa -3'
miRNA:   3'- -UGGC--CCGCGGA-GGCUcaGGUau-AGGG- -5'
30212 3' -59.2 NC_006273.1 + 123352 0.67 0.825037
Target:  5'- -gUGGGCGUCagaUCCGcGUCCGUugAUUCCg -3'
miRNA:   3'- ugGCCCGCGG---AGGCuCAGGUA--UAGGG- -5'
30212 3' -59.2 NC_006273.1 + 211590 0.67 0.816943
Target:  5'- uGCCGGauccgacaucaGUGgCUCUGAGUCC---UCCCg -3'
miRNA:   3'- -UGGCC-----------CGCgGAGGCUCAGGuauAGGG- -5'
30212 3' -59.2 NC_006273.1 + 94322 0.67 0.816943
Target:  5'- gGCCGaGGC-CCggcgCCG-GUCCGUccgcgggcccGUCCCa -3'
miRNA:   3'- -UGGC-CCGcGGa---GGCuCAGGUA----------UAGGG- -5'
30212 3' -59.2 NC_006273.1 + 150561 0.68 0.807034
Target:  5'- cUCGGGUGCCUucagggagccggaCCGAccuuggcugccaaGUCCGUAcCCCu -3'
miRNA:   3'- uGGCCCGCGGA-------------GGCU-------------CAGGUAUaGGG- -5'
30212 3' -59.2 NC_006273.1 + 183752 0.68 0.791792
Target:  5'- -aCGGGUGCUguccgcgccgCCGAGccugCCGUcgCCCg -3'
miRNA:   3'- ugGCCCGCGGa---------GGCUCa---GGUAuaGGG- -5'
30212 3' -59.2 NC_006273.1 + 128894 0.68 0.783142
Target:  5'- cGCUGGGCGUCagCC---UCUAUAUCCCc -3'
miRNA:   3'- -UGGCCCGCGGa-GGcucAGGUAUAGGG- -5'
30212 3' -59.2 NC_006273.1 + 116031 0.68 0.765486
Target:  5'- cCCGGGCGUCUCCauagaAG-CCGg--CCCg -3'
miRNA:   3'- uGGCCCGCGGAGGc----UCaGGUauaGGG- -5'
30212 3' -59.2 NC_006273.1 + 1086 0.68 0.765486
Target:  5'- cGCCGGGCGCCccUCCGAGUagcggcaaCAacagcaacuuuUGgcacggCCCg -3'
miRNA:   3'- -UGGCCCGCGG--AGGCUCAg-------GU-----------AUa-----GGG- -5'
30212 3' -59.2 NC_006273.1 + 195979 0.68 0.765486
Target:  5'- cGCCGGGCGCCccUCCGAGUagcggcaaCAacagcaacuuuUGgcacggCCCg -3'
miRNA:   3'- -UGGCCCGCGG--AGGCUCAg-------GU-----------AUa-----GGG- -5'
30212 3' -59.2 NC_006273.1 + 78529 0.68 0.765486
Target:  5'- cACCGGGCGCCgucaggaCGuaaaAGaCCcgAUCCCc -3'
miRNA:   3'- -UGGCCCGCGGag-----GC----UCaGGuaUAGGG- -5'
30212 3' -59.2 NC_006273.1 + 71509 0.69 0.747406
Target:  5'- cACCGGGUgggugGCCUCUGAGaUCUcgGUCg- -3'
miRNA:   3'- -UGGCCCG-----CGGAGGCUC-AGGuaUAGgg -5'
30212 3' -59.2 NC_006273.1 + 35985 0.69 0.728966
Target:  5'- uUCGGGCGCUUgUGGGUCCAggcAUCa- -3'
miRNA:   3'- uGGCCCGCGGAgGCUCAGGUa--UAGgg -5'
30212 3' -59.2 NC_006273.1 + 177565 0.69 0.710227
Target:  5'- cGCCGGGCGUCUUCGcAGcguUCCcgGUCg- -3'
miRNA:   3'- -UGGCCCGCGGAGGC-UC---AGGuaUAGgg -5'
30212 3' -59.2 NC_006273.1 + 152053 0.7 0.691251
Target:  5'- cGCCGGGUcCCaccacgCCGGGUCCA---CCCg -3'
miRNA:   3'- -UGGCCCGcGGa-----GGCUCAGGUauaGGG- -5'
30212 3' -59.2 NC_006273.1 + 178359 0.7 0.691251
Target:  5'- gGCCGcGGaCGCCUCCuccuccucGUCCcaGUCCCg -3'
miRNA:   3'- -UGGC-CC-GCGGAGGcu------CAGGuaUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.