miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30212 5' -57 NC_006273.1 + 228915 0.65 0.935352
Target:  5'- -cGGAGcCCGcacacuggcuagaaUACgUGGCGGUCCAGu -3'
miRNA:   3'- aaUCUCaGGC--------------AUGgACCGUCGGGUCc -5'
30212 5' -57 NC_006273.1 + 140171 0.66 0.931935
Target:  5'- gUGGGGUCCGaggcGCCgaccccggcugGGCGGCCgAuGGg -3'
miRNA:   3'- aAUCUCAGGCa---UGGa----------CCGUCGGgU-CC- -5'
30212 5' -57 NC_006273.1 + 137382 0.66 0.929932
Target:  5'- uUUGGAucGUCCGUgaucgccgcggacGCCUGcgacguuggcucucGCAGCCCgAGGu -3'
miRNA:   3'- -AAUCU--CAGGCA-------------UGGAC--------------CGUCGGG-UCC- -5'
30212 5' -57 NC_006273.1 + 55105 0.66 0.921558
Target:  5'- --uGAGUUCgGUGCCUGGcCAGuCCCuacGGc -3'
miRNA:   3'- aauCUCAGG-CAUGGACC-GUC-GGGu--CC- -5'
30212 5' -57 NC_006273.1 + 119683 0.66 0.921558
Target:  5'- gUUAGGGUCCGaacagGCCa-GCuGCuCCAGGg -3'
miRNA:   3'- -AAUCUCAGGCa----UGGacCGuCG-GGUCC- -5'
30212 5' -57 NC_006273.1 + 44436 0.66 0.916029
Target:  5'- -aGGAGggcaCCGUGCCccgaGGCGGCgaCGGGc -3'
miRNA:   3'- aaUCUCa---GGCAUGGa---CCGUCGg-GUCC- -5'
30212 5' -57 NC_006273.1 + 115776 0.66 0.916029
Target:  5'- -aAGGGUUCGUACgCUucGGCAcCCCAGu -3'
miRNA:   3'- aaUCUCAGGCAUG-GA--CCGUcGGGUCc -5'
30212 5' -57 NC_006273.1 + 196391 0.67 0.904293
Target:  5'- -cGGA--CUGUACCUGGCgcugGGCgCCGGGu -3'
miRNA:   3'- aaUCUcaGGCAUGGACCG----UCG-GGUCC- -5'
30212 5' -57 NC_006273.1 + 1498 0.67 0.904293
Target:  5'- -cGGA--CUGUACCUGGCgcugGGCgCCGGGu -3'
miRNA:   3'- aaUCUcaGGCAUGGACCG----UCG-GGUCC- -5'
30212 5' -57 NC_006273.1 + 173554 0.67 0.885031
Target:  5'- ----cGUCUGUACCgUGGCguGGCUUAGGa -3'
miRNA:   3'- aaucuCAGGCAUGG-ACCG--UCGGGUCC- -5'
30212 5' -57 NC_006273.1 + 84799 0.67 0.878179
Target:  5'- -aGGGGUaCGgACUUGGCAGCCaAGGu -3'
miRNA:   3'- aaUCUCAgGCaUGGACCGUCGGgUCC- -5'
30212 5' -57 NC_006273.1 + 192064 0.67 0.878179
Target:  5'- -cGGAGUCUGU--CUGGUGGCCCuGa -3'
miRNA:   3'- aaUCUCAGGCAugGACCGUCGGGuCc -5'
30212 5' -57 NC_006273.1 + 94495 0.67 0.871119
Target:  5'- -cGGGGUCCcgGUucCCguccGCGGCCCGGGg -3'
miRNA:   3'- aaUCUCAGG--CAu-GGac--CGUCGGGUCC- -5'
30212 5' -57 NC_006273.1 + 152831 0.67 0.871119
Target:  5'- -aAGGGUCUGgacgACCucaUGaGCGGCCUGGGc -3'
miRNA:   3'- aaUCUCAGGCa---UGG---AC-CGUCGGGUCC- -5'
30212 5' -57 NC_006273.1 + 105416 0.68 0.848739
Target:  5'- --cGAGcCCGUGCagcaGCAGCcCCAGGg -3'
miRNA:   3'- aauCUCaGGCAUGgac-CGUCG-GGUCC- -5'
30212 5' -57 NC_006273.1 + 84073 0.68 0.840897
Target:  5'- -cGGAGUgCCaGaaaggggaacUGCCUcgagcGGCGGCCCAGGa -3'
miRNA:   3'- aaUCUCA-GG-C----------AUGGA-----CCGUCGGGUCC- -5'
30212 5' -57 NC_006273.1 + 193756 0.68 0.840897
Target:  5'- ----cGUCUGUGgUUGGCAGCCaGGGg -3'
miRNA:   3'- aaucuCAGGCAUgGACCGUCGGgUCC- -5'
30212 5' -57 NC_006273.1 + 100464 0.69 0.799125
Target:  5'- ---cAG-CCGU-CCUGGUGGUCCAGGa -3'
miRNA:   3'- aaucUCaGGCAuGGACCGUCGGGUCC- -5'
30212 5' -57 NC_006273.1 + 120230 0.69 0.799125
Target:  5'- --uGAG-CCGaagcACCUGGCAGUgCAGGc -3'
miRNA:   3'- aauCUCaGGCa---UGGACCGUCGgGUCC- -5'
30212 5' -57 NC_006273.1 + 110222 0.78 0.316958
Target:  5'- -aAGAGUgCG-GCCUGGCGGUCUAGGg -3'
miRNA:   3'- aaUCUCAgGCaUGGACCGUCGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.