Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30213 | 3' | -56.1 | NC_006273.1 | + | 142023 | 0.66 | 0.961658 |
Target: 5'- uGUGACGUGGGCuUGuCAGGGGucacGUGa- -3' miRNA: 3'- -CGCUGUACCUGcAC-GUCCCCc---UACag -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 24418 | 0.66 | 0.95818 |
Target: 5'- cCGugGUGGcCGUGCuGGGcuGGGUG-Ca -3' miRNA: 3'- cGCugUACCuGCACGuCCC--CCUACaG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 174295 | 0.66 | 0.954491 |
Target: 5'- -aGGCAUGGGa--GCAGGGcucGGAUGUg -3' miRNA: 3'- cgCUGUACCUgcaCGUCCC---CCUACAg -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 29 | 0.66 | 0.95411 |
Target: 5'- aGgGGCggGGGgGUguuuucuGCGGGGGGGUGa- -3' miRNA: 3'- -CgCUGuaCCUgCA-------CGUCCCCCUACag -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 234860 | 0.66 | 0.95411 |
Target: 5'- aGgGGCggGGGgGUguuuucuGCGGGGGGGUGa- -3' miRNA: 3'- -CgCUGuaCCUgCA-------CGUCCCCCUACag -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 39967 | 0.66 | 0.95411 |
Target: 5'- aGgGGCggGGGgGUguuuucuGCGGGGGGGUGa- -3' miRNA: 3'- -CgCUGuaCCUgCA-------CGUCCCCCUACag -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 92174 | 0.66 | 0.950588 |
Target: 5'- aGCGGCAUGGGuCGgaaaGCAGGGuGGuaacauUCg -3' miRNA: 3'- -CGCUGUACCU-GCa---CGUCCC-CCuac---AG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 147357 | 0.66 | 0.946468 |
Target: 5'- aGCGAUuaacGGACGccGCcgGGGGGGAggugcacgaccUGUCg -3' miRNA: 3'- -CGCUGua--CCUGCa-CG--UCCCCCU-----------ACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 140686 | 0.66 | 0.946468 |
Target: 5'- gGCGACGacggcgGGugGUGguGGuGGuGGUGg- -3' miRNA: 3'- -CGCUGUa-----CCugCACguCC-CC-CUACag -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 128685 | 0.66 | 0.946468 |
Target: 5'- uCGugGUGuACGUGguGGGGu-UGUCu -3' miRNA: 3'- cGCugUACcUGCACguCCCCcuACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 171197 | 0.66 | 0.946468 |
Target: 5'- uGC-ACGuUGGGUGUGCAGaaGGGGGUGUUc -3' miRNA: 3'- -CGcUGU-ACCUGCACGUC--CCCCUACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 34170 | 0.67 | 0.942128 |
Target: 5'- cGCGACAgaGAgGUGUAGcGGGcUGUCa -3' miRNA: 3'- -CGCUGUacCUgCACGUCcCCCuACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 105529 | 0.67 | 0.932779 |
Target: 5'- uGCGACAcagccccGACGUGCcucgggAGGcGGuGAUGUCa -3' miRNA: 3'- -CGCUGUac-----CUGCACG------UCC-CC-CUACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 195106 | 0.68 | 0.911388 |
Target: 5'- uCGGCG-GGGUGUGuCAGGGGuGUGUCg -3' miRNA: 3'- cGCUGUaCCUGCAC-GUCCCCcUACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 101762 | 0.68 | 0.911388 |
Target: 5'- gGCGGCAUGGGCGcGUc--GGGcgGUCu -3' miRNA: 3'- -CGCUGUACCUGCaCGuccCCCuaCAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 213 | 0.68 | 0.911388 |
Target: 5'- uCGGCG-GGGUGUGuCAGGGGuGUGUCg -3' miRNA: 3'- cGCUGUaCCUGCAC-GUCCCCcUACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 235044 | 0.68 | 0.911388 |
Target: 5'- uCGGCG-GGGUGUGuCAGGGGuGUGUCg -3' miRNA: 3'- cGCUGUaCCUGCAC-GUCCCCcUACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 183044 | 0.68 | 0.905481 |
Target: 5'- gGCGACAgacgcagaUGGACGU--GGGGGGAcUGaUCc -3' miRNA: 3'- -CGCUGU--------ACCUGCAcgUCCCCCU-AC-AG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 126243 | 0.68 | 0.899353 |
Target: 5'- cGUGACGUGGuACGUGguGcu-GAUGUCg -3' miRNA: 3'- -CGCUGUACC-UGCACguCcccCUACAG- -5' |
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30213 | 3' | -56.1 | NC_006273.1 | + | 1025 | 0.68 | 0.899353 |
Target: 5'- gGgGACGggGGGUGUGCGgggacGGGGGGUGUg -3' miRNA: 3'- -CgCUGUa-CCUGCACGU-----CCCCCUACAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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