miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30213 3' -56.1 NC_006273.1 + 142023 0.66 0.961658
Target:  5'- uGUGACGUGGGCuUGuCAGGGGucacGUGa- -3'
miRNA:   3'- -CGCUGUACCUGcAC-GUCCCCc---UACag -5'
30213 3' -56.1 NC_006273.1 + 171197 0.66 0.946468
Target:  5'- uGC-ACGuUGGGUGUGCAGaaGGGGGUGUUc -3'
miRNA:   3'- -CGcUGU-ACCUGCACGUC--CCCCUACAG- -5'
30213 3' -56.1 NC_006273.1 + 140686 0.66 0.946468
Target:  5'- gGCGACGacggcgGGugGUGguGGuGGuGGUGg- -3'
miRNA:   3'- -CGCUGUa-----CCugCACguCC-CC-CUACag -5'
30213 3' -56.1 NC_006273.1 + 29 0.66 0.95411
Target:  5'- aGgGGCggGGGgGUguuuucuGCGGGGGGGUGa- -3'
miRNA:   3'- -CgCUGuaCCUgCA-------CGUCCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 24418 0.66 0.95818
Target:  5'- cCGugGUGGcCGUGCuGGGcuGGGUG-Ca -3'
miRNA:   3'- cGCugUACCuGCACGuCCC--CCUACaG- -5'
30213 3' -56.1 NC_006273.1 + 147357 0.66 0.946468
Target:  5'- aGCGAUuaacGGACGccGCcgGGGGGGAggugcacgaccUGUCg -3'
miRNA:   3'- -CGCUGua--CCUGCa-CG--UCCCCCU-----------ACAG- -5'
30213 3' -56.1 NC_006273.1 + 234860 0.66 0.95411
Target:  5'- aGgGGCggGGGgGUguuuucuGCGGGGGGGUGa- -3'
miRNA:   3'- -CgCUGuaCCUgCA-------CGUCCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 174295 0.66 0.954491
Target:  5'- -aGGCAUGGGa--GCAGGGcucGGAUGUg -3'
miRNA:   3'- cgCUGUACCUgcaCGUCCC---CCUACAg -5'
30213 3' -56.1 NC_006273.1 + 92174 0.66 0.950588
Target:  5'- aGCGGCAUGGGuCGgaaaGCAGGGuGGuaacauUCg -3'
miRNA:   3'- -CGCUGUACCU-GCa---CGUCCC-CCuac---AG- -5'
30213 3' -56.1 NC_006273.1 + 39967 0.66 0.95411
Target:  5'- aGgGGCggGGGgGUguuuucuGCGGGGGGGUGa- -3'
miRNA:   3'- -CgCUGuaCCUgCA-------CGUCCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 128685 0.66 0.946468
Target:  5'- uCGugGUGuACGUGguGGGGu-UGUCu -3'
miRNA:   3'- cGCugUACcUGCACguCCCCcuACAG- -5'
30213 3' -56.1 NC_006273.1 + 34170 0.67 0.942128
Target:  5'- cGCGACAgaGAgGUGUAGcGGGcUGUCa -3'
miRNA:   3'- -CGCUGUacCUgCACGUCcCCCuACAG- -5'
30213 3' -56.1 NC_006273.1 + 105529 0.67 0.932779
Target:  5'- uGCGACAcagccccGACGUGCcucgggAGGcGGuGAUGUCa -3'
miRNA:   3'- -CGCUGUac-----CUGCACG------UCC-CC-CUACAG- -5'
30213 3' -56.1 NC_006273.1 + 226232 0.68 0.893007
Target:  5'- aGCGACGUGacuaugauaaGCGUG-AGGGGGGUGc- -3'
miRNA:   3'- -CGCUGUACc---------UGCACgUCCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 195106 0.68 0.911388
Target:  5'- uCGGCG-GGGUGUGuCAGGGGuGUGUCg -3'
miRNA:   3'- cGCUGUaCCUGCAC-GUCCCCcUACAG- -5'
30213 3' -56.1 NC_006273.1 + 101762 0.68 0.911388
Target:  5'- gGCGGCAUGGGCGcGUc--GGGcgGUCu -3'
miRNA:   3'- -CGCUGUACCUGCaCGuccCCCuaCAG- -5'
30213 3' -56.1 NC_006273.1 + 1025 0.68 0.899353
Target:  5'- gGgGACGggGGGUGUGCGgggacGGGGGGUGUg -3'
miRNA:   3'- -CgCUGUa-CCUGCACGU-----CCCCCUACAg -5'
30213 3' -56.1 NC_006273.1 + 189847 0.68 0.893007
Target:  5'- gGUGGCAUcuGCGgcaugGCGGGGGGAgacgcGUCg -3'
miRNA:   3'- -CGCUGUAccUGCa----CGUCCCCCUa----CAG- -5'
30213 3' -56.1 NC_006273.1 + 51541 0.68 0.886446
Target:  5'- -aGGCcgGGACGacagagGaCGGGGGGGUGg- -3'
miRNA:   3'- cgCUGuaCCUGCa-----C-GUCCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 40963 0.68 0.899353
Target:  5'- gGgGACGggGGGUGUGCGgggacGGGGGGUGUg -3'
miRNA:   3'- -CgCUGUa-CCUGCACGU-----CCCCCUACAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.