miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30213 3' -56.1 NC_006273.1 + 201168 1.11 0.003164
Target:  5'- cGCGACAUGGACGUGCAGGGGGAUGUCu -3'
miRNA:   3'- -CGCUGUACCUGCACGUCCCCCUACAG- -5'
30213 3' -56.1 NC_006273.1 + 160611 0.72 0.737717
Target:  5'- gGCGGCgGUGGugGUGguGGcGGGAg--- -3'
miRNA:   3'- -CGCUG-UACCugCACguCC-CCCUacag -5'
30213 3' -56.1 NC_006273.1 + 194910 0.72 0.738664
Target:  5'- gGCGGCGgucggggugugucggGGGCGcgGCGGGGuGGGUGUg -3'
miRNA:   3'- -CGCUGUa--------------CCUGCa-CGUCCC-CCUACAg -5'
30213 3' -56.1 NC_006273.1 + 234848 0.72 0.738664
Target:  5'- gGCGGCGgucggggugugucggGGGCGcgGCGGGGuGGGUGUg -3'
miRNA:   3'- -CGCUGUa--------------CCUGCa-CGUCCC-CCUACAg -5'
30213 3' -56.1 NC_006273.1 + 17 0.72 0.738664
Target:  5'- gGCGGCGgucggggugugucggGGGCGcgGCGGGGuGGGUGUg -3'
miRNA:   3'- -CGCUGUa--------------CCUGCa-CGUCCC-CCUACAg -5'
30213 3' -56.1 NC_006273.1 + 233316 0.71 0.747147
Target:  5'- uGCGAUgcgGUGGAUGUGguGGgcuGGGGUGg- -3'
miRNA:   3'- -CGCUG---UACCUGCACguCC---CCCUACag -5'
30213 3' -56.1 NC_006273.1 + 80238 0.71 0.782937
Target:  5'- uCGuCAUGGugGUuggacagGCAGGGG-AUGUCg -3'
miRNA:   3'- cGCuGUACCugCA-------CGUCCCCcUACAG- -5'
30213 3' -56.1 NC_006273.1 + 103978 0.7 0.80057
Target:  5'- cGCGAacucgccCAUGGagGCGUGCGuGGGGAUGa- -3'
miRNA:   3'- -CGCU-------GUACC--UGCACGUcCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 158614 0.7 0.810027
Target:  5'- -----cUGGACGUGguGGGGGugcagGUGUCc -3'
miRNA:   3'- cgcuguACCUGCACguCCCCC-----UACAG- -5'
30213 3' -56.1 NC_006273.1 + 145612 0.69 0.872693
Target:  5'- aGCGACGgucUGGGCG-GCGGucguggugguGGGGGUGg- -3'
miRNA:   3'- -CGCUGU---ACCUGCaCGUC----------CCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 51541 0.68 0.886446
Target:  5'- -aGGCcgGGACGacagagGaCGGGGGGGUGg- -3'
miRNA:   3'- cgCUGuaCCUGCa-----C-GUCCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 189847 0.68 0.893007
Target:  5'- gGUGGCAUcuGCGgcaugGCGGGGGGAgacgcGUCg -3'
miRNA:   3'- -CGCUGUAccUGCa----CGUCCCCCUa----CAG- -5'
30213 3' -56.1 NC_006273.1 + 226232 0.68 0.893007
Target:  5'- aGCGACGUGacuaugauaaGCGUG-AGGGGGGUGc- -3'
miRNA:   3'- -CGCUGUACc---------UGCACgUCCCCCUACag -5'
30213 3' -56.1 NC_006273.1 + 1025 0.68 0.899353
Target:  5'- gGgGACGggGGGUGUGCGgggacGGGGGGUGUg -3'
miRNA:   3'- -CgCUGUa-CCUGCACGU-----CCCCCUACAg -5'
30213 3' -56.1 NC_006273.1 + 40997 0.68 0.899353
Target:  5'- gGgGACGggGGGUGUGCGgggacGGGGGGUGUg -3'
miRNA:   3'- -CgCUGUa-CCUGCACGU-----CCCCCUACAg -5'
30213 3' -56.1 NC_006273.1 + 40963 0.68 0.899353
Target:  5'- gGgGACGggGGGUGUGCGgggacGGGGGGUGUg -3'
miRNA:   3'- -CgCUGUa-CCUGCACGU-----CCCCCUACAg -5'
30213 3' -56.1 NC_006273.1 + 126243 0.68 0.899353
Target:  5'- cGUGACGUGGuACGUGguGcu-GAUGUCg -3'
miRNA:   3'- -CGCUGUACC-UGCACguCcccCUACAG- -5'
30213 3' -56.1 NC_006273.1 + 1059 0.68 0.899353
Target:  5'- gGgGACGggGGGUGUGCGgggacGGGGGGUGUg -3'
miRNA:   3'- -CgCUGUa-CCUGCACGU-----CCCCCUACAg -5'
30213 3' -56.1 NC_006273.1 + 183044 0.68 0.905481
Target:  5'- gGCGACAgacgcagaUGGACGU--GGGGGGAcUGaUCc -3'
miRNA:   3'- -CGCUGU--------ACCUGCAcgUCCCCCU-AC-AG- -5'
30213 3' -56.1 NC_006273.1 + 101762 0.68 0.911388
Target:  5'- gGCGGCAUGGGCGcGUc--GGGcgGUCu -3'
miRNA:   3'- -CGCUGUACCUGCaCGuccCCCuaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.