miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30213 5' -55.9 NC_006273.1 + 161631 0.66 0.957226
Target:  5'- cUGGCGGCgCCGCUGCcggGCCUCg--GcCg -3'
miRNA:   3'- cACUGUCG-GGCGAUG---UGGAGagaCaG- -5'
30213 5' -55.9 NC_006273.1 + 124449 0.66 0.957226
Target:  5'- cGUGcGCGGCUCGCcgACGCUgcgCUCgcgGUCc -3'
miRNA:   3'- -CAC-UGUCGGGCGa-UGUGGa--GAGa--CAG- -5'
30213 5' -55.9 NC_006273.1 + 99246 0.66 0.953033
Target:  5'- -cGAaaacaGGCCCGCUGCcaaguccGCCgCUCgcgGUCa -3'
miRNA:   3'- caCUg----UCGGGCGAUG-------UGGaGAGa--CAG- -5'
30213 5' -55.9 NC_006273.1 + 214183 0.66 0.949404
Target:  5'- -cGGCAGCCgGCcaccccccAUACCUgUCUGUg -3'
miRNA:   3'- caCUGUCGGgCGa-------UGUGGAgAGACAg -5'
30213 5' -55.9 NC_006273.1 + 208219 0.66 0.949404
Target:  5'- --uGCAGCgUGCgGCGCCUCUCucauggauccacUGUCa -3'
miRNA:   3'- cacUGUCGgGCGaUGUGGAGAG------------ACAG- -5'
30213 5' -55.9 NC_006273.1 + 87492 0.66 0.945158
Target:  5'- -aGGCGGCCCGg-GCGCCgacgCgaaUGUCg -3'
miRNA:   3'- caCUGUCGGGCgaUGUGGa---Gag-ACAG- -5'
30213 5' -55.9 NC_006273.1 + 121692 0.66 0.940685
Target:  5'- cGUGAgGGaucccagCCGCUGCGCacgCUCUCgGUCa -3'
miRNA:   3'- -CACUgUCg------GGCGAUGUG---GAGAGaCAG- -5'
30213 5' -55.9 NC_006273.1 + 232463 0.66 0.935983
Target:  5'- -aGACAGCuCUGCacugaaaACACaCUCUcCUGUCa -3'
miRNA:   3'- caCUGUCG-GGCGa------UGUG-GAGA-GACAG- -5'
30213 5' -55.9 NC_006273.1 + 180193 0.67 0.93105
Target:  5'- cGUGGCA-CCCGCUuaccGCGCCaccggCUGUCc -3'
miRNA:   3'- -CACUGUcGGGCGA----UGUGGaga--GACAG- -5'
30213 5' -55.9 NC_006273.1 + 120331 0.67 0.93105
Target:  5'- cGUGGCAGCuUUGCUgACAUCUCUCg--- -3'
miRNA:   3'- -CACUGUCG-GGCGA-UGUGGAGAGacag -5'
30213 5' -55.9 NC_006273.1 + 162002 0.67 0.909006
Target:  5'- cGUGGCuGCCCGC-GCGCUUugcgaCUCUGg- -3'
miRNA:   3'- -CACUGuCGGGCGaUGUGGA-----GAGACag -5'
30213 5' -55.9 NC_006273.1 + 141934 0.67 0.909006
Target:  5'- cGUGACguAGCUCGCUACGCUcgCUacGUCa -3'
miRNA:   3'- -CACUG--UCGGGCGAUGUGGa-GAgaCAG- -5'
30213 5' -55.9 NC_006273.1 + 94550 0.67 0.909006
Target:  5'- -cGcACcGCCUGUaACACCUCUCUGa- -3'
miRNA:   3'- caC-UGuCGGGCGaUGUGGAGAGACag -5'
30213 5' -55.9 NC_006273.1 + 156813 0.67 0.908408
Target:  5'- uUGGCGGCCCGUUcugaggaGCuACC-CUCgGUCg -3'
miRNA:   3'- cACUGUCGGGCGA-------UG-UGGaGAGaCAG- -5'
30213 5' -55.9 NC_006273.1 + 1539 0.68 0.89661
Target:  5'- -cGcACAgGCCCGCcaACACCUCUacgGUCa -3'
miRNA:   3'- caC-UGU-CGGGCGa-UGUGGAGAga-CAG- -5'
30213 5' -55.9 NC_006273.1 + 120144 0.68 0.890076
Target:  5'- -cGAgGGCCgGCU-CACCUCUaUGUUg -3'
miRNA:   3'- caCUgUCGGgCGAuGUGGAGAgACAG- -5'
30213 5' -55.9 NC_006273.1 + 48052 0.68 0.869171
Target:  5'- gGUGACGGCgCCGCUG-ACCgacgucgaUCUGUUg -3'
miRNA:   3'- -CACUGUCG-GGCGAUgUGGag------AGACAG- -5'
30213 5' -55.9 NC_006273.1 + 116975 0.69 0.846414
Target:  5'- aGUGGCAGCgCUGCggcaGCACUg--CUGUCg -3'
miRNA:   3'- -CACUGUCG-GGCGa---UGUGGagaGACAG- -5'
30213 5' -55.9 NC_006273.1 + 84488 0.69 0.821963
Target:  5'- -cGACAaCCUGCUGCACUUCgcgcUCUGUa -3'
miRNA:   3'- caCUGUcGGGCGAUGUGGAG----AGACAg -5'
30213 5' -55.9 NC_006273.1 + 196019 0.7 0.813469
Target:  5'- uUGGCacGGCCCGgaGCGCCUguugCUGUCu -3'
miRNA:   3'- cACUG--UCGGGCgaUGUGGAga--GACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.