miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30214 3' -52.1 NC_006273.1 + 92237 0.66 0.994072
Target:  5'- cGGCg--CGCCGUGCCcgucUCCUGAAAg -3'
miRNA:   3'- uCCGaaaGCGGUGUGGau--AGGACUUU- -5'
30214 3' -52.1 NC_006273.1 + 226815 0.66 0.994072
Target:  5'- gGGGUgcagCGCUggACACCUGUUCgGAGAc -3'
miRNA:   3'- -UCCGaaa-GCGG--UGUGGAUAGGaCUUU- -5'
30214 3' -52.1 NC_006273.1 + 164824 0.66 0.993158
Target:  5'- cGGCgUUUCGgUcCACgUGUCCUGGAGc -3'
miRNA:   3'- uCCG-AAAGCgGuGUGgAUAGGACUUU- -5'
30214 3' -52.1 NC_006273.1 + 84124 0.66 0.990994
Target:  5'- aAGGUccgCGCCGCGCCg--CUUGAu- -3'
miRNA:   3'- -UCCGaaaGCGGUGUGGauaGGACUuu -5'
30214 3' -52.1 NC_006273.1 + 56216 0.66 0.989727
Target:  5'- aAGGCUggCGCUGCGCCg--CCUa--- -3'
miRNA:   3'- -UCCGAaaGCGGUGUGGauaGGAcuuu -5'
30214 3' -52.1 NC_006273.1 + 95068 0.67 0.986777
Target:  5'- cGGCUcUCGguCCGC-CUUAUCCUGGGc -3'
miRNA:   3'- uCCGAaAGC--GGUGuGGAUAGGACUUu -5'
30214 3' -52.1 NC_006273.1 + 127994 0.67 0.985077
Target:  5'- cGGCg--CGCCGCACCgcccauggguUCCUGc-- -3'
miRNA:   3'- uCCGaaaGCGGUGUGGau--------AGGACuuu -5'
30214 3' -52.1 NC_006273.1 + 43164 0.67 0.984898
Target:  5'- cAGGCguuuUUCGCCGCAUUUuuucaggAUCUUGggGu -3'
miRNA:   3'- -UCCGa---AAGCGGUGUGGA-------UAGGACuuU- -5'
30214 3' -52.1 NC_006273.1 + 177167 0.67 0.983216
Target:  5'- uGGGCUUcgCGCgGCACCgUGUUCgagGAGGa -3'
miRNA:   3'- -UCCGAAa-GCGgUGUGG-AUAGGa--CUUU- -5'
30214 3' -52.1 NC_006273.1 + 14927 0.67 0.983216
Target:  5'- aGGGCUcguaCGCCACGgCCgaacgaAUCCUGGGu -3'
miRNA:   3'- -UCCGAaa--GCGGUGU-GGa-----UAGGACUUu -5'
30214 3' -52.1 NC_006273.1 + 93033 0.67 0.978973
Target:  5'- cGGGCccgaUGCCACgGCgCUGUCCUGAc- -3'
miRNA:   3'- -UCCGaaa-GCGGUG-UG-GAUAGGACUuu -5'
30214 3' -52.1 NC_006273.1 + 198351 0.68 0.976576
Target:  5'- gGGGCgagcaUUCGCCGCACUcgcugaCUGAGAu -3'
miRNA:   3'- -UCCGa----AAGCGGUGUGGauag--GACUUU- -5'
30214 3' -52.1 NC_006273.1 + 19814 0.68 0.973984
Target:  5'- uGGCUggugUUGCCGCACCgg--CUGGAGc -3'
miRNA:   3'- uCCGAa---AGCGGUGUGGauagGACUUU- -5'
30214 3' -52.1 NC_006273.1 + 44464 0.68 0.973984
Target:  5'- -uGCUggacCGCCGCGCUU-UCCUGAGAu -3'
miRNA:   3'- ucCGAaa--GCGGUGUGGAuAGGACUUU- -5'
30214 3' -52.1 NC_006273.1 + 117100 0.68 0.968187
Target:  5'- uGGCgUUCaCCACGCCgg-CCUGAGc -3'
miRNA:   3'- uCCGaAAGcGGUGUGGauaGGACUUu -5'
30214 3' -52.1 NC_006273.1 + 1883 0.69 0.961527
Target:  5'- cAGGCUUUCGCgCACACgauUCCgagGAc- -3'
miRNA:   3'- -UCCGAAAGCG-GUGUGgauAGGa--CUuu -5'
30214 3' -52.1 NC_006273.1 + 135405 0.7 0.935952
Target:  5'- -uGCUUUCGCaCGCACCUGUgugaUCUGGGc -3'
miRNA:   3'- ucCGAAAGCG-GUGUGGAUA----GGACUUu -5'
30214 3' -52.1 NC_006273.1 + 64805 0.71 0.888127
Target:  5'- uGGGCgacgaagUGCCGCGCCg--CCUGGAGu -3'
miRNA:   3'- -UCCGaaa----GCGGUGUGGauaGGACUUU- -5'
30214 3' -52.1 NC_006273.1 + 213826 0.71 0.881062
Target:  5'- gAGGCUcagccgcugCGCCGCGCCgccGUCCUcGAAAc -3'
miRNA:   3'- -UCCGAaa-------GCGGUGUGGa--UAGGA-CUUU- -5'
30214 3' -52.1 NC_006273.1 + 202203 1.07 0.011478
Target:  5'- gAGGCUUUCGCCACACCUAUCCUGAAAg -3'
miRNA:   3'- -UCCGAAAGCGGUGUGGAUAGGACUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.