miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30214 5' -45 NC_006273.1 + 136951 0.66 1
Target:  5'- uUUCUUUAUG-UGGGgacggGAauCGAUGUCa -3'
miRNA:   3'- -AAGAAAUACuAUCCaca--CU--GCUACAG- -5'
30214 5' -45 NC_006273.1 + 53467 0.66 1
Target:  5'- aUUCUUagugugAUGAUAGGUaagggcacucGUGAgGAUGUg -3'
miRNA:   3'- -AAGAAa-----UACUAUCCA----------CACUgCUACAg -5'
30214 5' -45 NC_006273.1 + 120449 0.66 0.999999
Target:  5'- -----gGUGAcAGGUGUGGCGGccaaaaguugcgUGUCu -3'
miRNA:   3'- aagaaaUACUaUCCACACUGCU------------ACAG- -5'
30214 5' -45 NC_006273.1 + 60814 0.68 0.999994
Target:  5'- gUUCUUUGUGuaccaggaacgAGGUGUGA--AUGUCg -3'
miRNA:   3'- -AAGAAAUACua---------UCCACACUgcUACAG- -5'
30214 5' -45 NC_006273.1 + 194950 0.68 0.999978
Target:  5'- ----gUGUGccGGGUGUGGCGGgugUGUCa -3'
miRNA:   3'- aagaaAUACuaUCCACACUGCU---ACAG- -5'
30214 5' -45 NC_006273.1 + 57 0.68 0.999978
Target:  5'- ----gUGUGccGGGUGUGGCGGgugUGUCa -3'
miRNA:   3'- aagaaAUACuaUCCACACUGCU---ACAG- -5'
30214 5' -45 NC_006273.1 + 234888 0.68 0.999978
Target:  5'- ----gUGUGccGGGUGUGGCGGgugUGUCa -3'
miRNA:   3'- aagaaAUACuaUCCACACUGCU---ACAG- -5'
30214 5' -45 NC_006273.1 + 33180 0.71 0.99945
Target:  5'- -gCUUUcagGAUAGGUGUGGCGAa--- -3'
miRNA:   3'- aaGAAAua-CUAUCCACACUGCUacag -5'
30214 5' -45 NC_006273.1 + 113000 0.72 0.998957
Target:  5'- ----gUGUGAUGGGgugugGUGACGGUGg- -3'
miRNA:   3'- aagaaAUACUAUCCa----CACUGCUACag -5'
30214 5' -45 NC_006273.1 + 166421 0.72 0.99845
Target:  5'- -----cGUGGUGGGagugGUGACGGUGUUa -3'
miRNA:   3'- aagaaaUACUAUCCa---CACUGCUACAG- -5'
30214 5' -45 NC_006273.1 + 202237 1.09 0.046995
Target:  5'- aUUCUUUAUGAUAGGUGUGACGAUGUCu -3'
miRNA:   3'- -AAGAAAUACUAUCCACACUGCUACAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.