miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30216 5' -61.4 NC_006273.1 + 73179 0.66 0.800543
Target:  5'- cGGAGGCgguagacgcggcgccGCAaCCACCGCCUCc--GCc -3'
miRNA:   3'- -CCUCCG---------------CGUcGGUGGCGGAGuacCGc -5'
30216 5' -61.4 NC_006273.1 + 64047 0.66 0.797172
Target:  5'- uGGuGGCGCGGCCuCCuCCUCucuGCu -3'
miRNA:   3'- -CCuCCGCGUCGGuGGcGGAGuacCGc -5'
30216 5' -61.4 NC_006273.1 + 80535 0.66 0.797172
Target:  5'- -uAGGCGUAgGCCGCCuGCUcgCAgGGCGu -3'
miRNA:   3'- ccUCCGCGU-CGGUGG-CGGa-GUaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 173529 0.66 0.797172
Target:  5'- cGGcGGCGUAcagcgggucGCgCGCCGUCUguacCGUGGCGu -3'
miRNA:   3'- -CCuCCGCGU---------CG-GUGGCGGA----GUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 171115 0.66 0.797172
Target:  5'- -aAGGCGCcauccgcuucGGCCGCCGCCgcaacgccCGUGcccGCGg -3'
miRNA:   3'- ccUCCGCG----------UCGGUGGCGGa-------GUAC---CGC- -5'
30216 5' -61.4 NC_006273.1 + 48021 0.66 0.797172
Target:  5'- aGAGaaacaGCGU-GCCuCCGCCggaCAUGGCGg -3'
miRNA:   3'- cCUC-----CGCGuCGGuGGCGGa--GUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 167255 0.66 0.797172
Target:  5'- uGGGcGGCGUGGUgACCGUggCgGUGGCGg -3'
miRNA:   3'- -CCU-CCGCGUCGgUGGCGgaG-UACCGC- -5'
30216 5' -61.4 NC_006273.1 + 63191 0.66 0.795479
Target:  5'- --cGGCGCGGCCucgccuuugccuCCGCUUgAcGGCGu -3'
miRNA:   3'- ccuCCGCGUCGGu-----------GGCGGAgUaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 96086 0.66 0.794631
Target:  5'- cGAGGCgaguccGCGGUCGCCGCCUguucCGUgaugcuaccuagagGGCGc -3'
miRNA:   3'- cCUCCG------CGUCGGUGGCGGA----GUA--------------CCGC- -5'
30216 5' -61.4 NC_006273.1 + 214988 0.66 0.788655
Target:  5'- uGGGGCGaC-GCCGCUGCU--GUGGCa -3'
miRNA:   3'- cCUCCGC-GuCGGUGGCGGagUACCGc -5'
30216 5' -61.4 NC_006273.1 + 105161 0.66 0.788655
Target:  5'- uGGAuGCGCGgcGCCGCgGCCUCGcccaGGUa -3'
miRNA:   3'- -CCUcCGCGU--CGGUGgCGGAGUa---CCGc -5'
30216 5' -61.4 NC_006273.1 + 87858 0.66 0.788655
Target:  5'- --cGGCGCGcccCCAUCGCCUCccGaGCGa -3'
miRNA:   3'- ccuCCGCGUc--GGUGGCGGAGuaC-CGC- -5'
30216 5' -61.4 NC_006273.1 + 127994 0.66 0.788655
Target:  5'- --cGGCGC-GCCgcACCGCC-CAUGGg- -3'
miRNA:   3'- ccuCCGCGuCGG--UGGCGGaGUACCgc -5'
30216 5' -61.4 NC_006273.1 + 80844 0.66 0.780014
Target:  5'- cGGGGCGCAG-CGCCuCCU--UGGUGa -3'
miRNA:   3'- cCUCCGCGUCgGUGGcGGAguACCGC- -5'
30216 5' -61.4 NC_006273.1 + 161734 0.66 0.780014
Target:  5'- ---cGCGCuuugcGCCGCCGCgUCAUGGa- -3'
miRNA:   3'- ccucCGCGu----CGGUGGCGgAGUACCgc -5'
30216 5' -61.4 NC_006273.1 + 82022 0.66 0.774773
Target:  5'- aGGGcacGCGCGuGCCGCCgGCCUCGgacgaagcggcagcGGCGg -3'
miRNA:   3'- -CCUc--CGCGU-CGGUGG-CGGAGUa-------------CCGC- -5'
30216 5' -61.4 NC_006273.1 + 112303 0.66 0.771256
Target:  5'- cGAGGCGcCAGCCgACC-Ca--GUGGCGu -3'
miRNA:   3'- cCUCCGC-GUCGG-UGGcGgagUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 102583 0.66 0.771256
Target:  5'- uGGGGcCGguGCUGCCGCCgUCGUugacGCGa -3'
miRNA:   3'- cCUCC-GCguCGGUGGCGG-AGUAc---CGC- -5'
30216 5' -61.4 NC_006273.1 + 152881 0.66 0.771256
Target:  5'- --uGGCGUAGCCAUUgggGCCguggGUGGCGc -3'
miRNA:   3'- ccuCCGCGUCGGUGG---CGGag--UACCGC- -5'
30216 5' -61.4 NC_006273.1 + 17381 0.66 0.771256
Target:  5'- aGGAGGggaagaCGCGGUUGCCGCgCgUAUGGCc -3'
miRNA:   3'- -CCUCC------GCGUCGGUGGCG-GaGUACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.