miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30216 5' -61.4 NC_006273.1 + 31938 0.66 0.771256
Target:  5'- cGGcGGCaGCAGuagcucCCAaCGCCUCGUaGGCGa -3'
miRNA:   3'- -CCuCCG-CGUC------GGUgGCGGAGUA-CCGC- -5'
30216 5' -61.4 NC_006273.1 + 147424 0.66 0.762388
Target:  5'- --cGGCGCGGCguCCGgCgUCggggGUGGCGg -3'
miRNA:   3'- ccuCCGCGUCGguGGC-GgAG----UACCGC- -5'
30216 5' -61.4 NC_006273.1 + 196554 0.66 0.762388
Target:  5'- ---cGCGCGacGCUGCUGCCUCAgccGGCGc -3'
miRNA:   3'- ccucCGCGU--CGGUGGCGGAGUa--CCGC- -5'
30216 5' -61.4 NC_006273.1 + 129538 0.66 0.753419
Target:  5'- --cGGCGCugcGCCgcGCCGCCUC--GGCu -3'
miRNA:   3'- ccuCCGCGu--CGG--UGGCGGAGuaCCGc -5'
30216 5' -61.4 NC_006273.1 + 104235 0.66 0.762388
Target:  5'- ---cGCGCAccucGCCGCCGUgUUcgGGCGa -3'
miRNA:   3'- ccucCGCGU----CGGUGGCGgAGuaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 154208 0.66 0.752516
Target:  5'- aGGAGGagcaCGUGGCCuacguggACCGCUUCGUG-CGg -3'
miRNA:   3'- -CCUCC----GCGUCGG-------UGGCGGAGUACcGC- -5'
30216 5' -61.4 NC_006273.1 + 118262 0.66 0.762388
Target:  5'- cGGAGGUGCcaagguagcugAGCgCGCUcagGCCggCGUGGUGa -3'
miRNA:   3'- -CCUCCGCG-----------UCG-GUGG---CGGa-GUACCGC- -5'
30216 5' -61.4 NC_006273.1 + 127994 0.66 0.788655
Target:  5'- --cGGCGC-GCCgcACCGCC-CAUGGg- -3'
miRNA:   3'- ccuCCGCGuCGG--UGGCGGaGUACCgc -5'
30216 5' -61.4 NC_006273.1 + 87393 0.66 0.765948
Target:  5'- --cGGCGCAaccuccuccaccaccGCCGCCGCCggcuccuccgccUCG-GGCGa -3'
miRNA:   3'- ccuCCGCGU---------------CGGUGGCGG------------AGUaCCGC- -5'
30216 5' -61.4 NC_006273.1 + 96086 0.66 0.794631
Target:  5'- cGAGGCgaguccGCGGUCGCCGCCUguucCGUgaugcuaccuagagGGCGc -3'
miRNA:   3'- cCUCCG------CGUCGGUGGCGGA----GUA--------------CCGC- -5'
30216 5' -61.4 NC_006273.1 + 102583 0.66 0.771256
Target:  5'- uGGGGcCGguGCUGCCGCCgUCGUugacGCGa -3'
miRNA:   3'- cCUCC-GCguCGGUGGCGG-AGUAc---CGC- -5'
30216 5' -61.4 NC_006273.1 + 173196 0.66 0.759708
Target:  5'- --cGGCGCgacaauugacguagGGCCG-CGCCUCcGUGGCa -3'
miRNA:   3'- ccuCCGCG--------------UCGGUgGCGGAG-UACCGc -5'
30216 5' -61.4 NC_006273.1 + 17381 0.66 0.771256
Target:  5'- aGGAGGggaagaCGCGGUUGCCGCgCgUAUGGCc -3'
miRNA:   3'- -CCUCC------GCGUCGGUGGCG-GaGUACCGc -5'
30216 5' -61.4 NC_006273.1 + 27174 0.66 0.753419
Target:  5'- aGAGGCGCcGCa--CGCUgCAUGGCu -3'
miRNA:   3'- cCUCCGCGuCGgugGCGGaGUACCGc -5'
30216 5' -61.4 NC_006273.1 + 167658 0.66 0.762388
Target:  5'- cGGcGGCGCaacggcggggucGGCCGCCGUUcgucgUCAcggGGCGg -3'
miRNA:   3'- -CCuCCGCG------------UCGGUGGCGG-----AGUa--CCGC- -5'
30216 5' -61.4 NC_006273.1 + 214988 0.66 0.788655
Target:  5'- uGGGGCGaC-GCCGCUGCU--GUGGCa -3'
miRNA:   3'- cCUCCGC-GuCGGUGGCGGagUACCGc -5'
30216 5' -61.4 NC_006273.1 + 1661 0.66 0.762388
Target:  5'- ---cGCGCGacGCUGCUGCCUCAgccGGCGc -3'
miRNA:   3'- ccucCGCGU--CGGUGGCGGAGUa--CCGC- -5'
30216 5' -61.4 NC_006273.1 + 167255 0.66 0.797172
Target:  5'- uGGGcGGCGUGGUgACCGUggCgGUGGCGg -3'
miRNA:   3'- -CCU-CCGCGUCGgUGGCGgaG-UACCGC- -5'
30216 5' -61.4 NC_006273.1 + 73179 0.66 0.800543
Target:  5'- cGGAGGCgguagacgcggcgccGCAaCCACCGCCUCc--GCc -3'
miRNA:   3'- -CCUCCG---------------CGUcGGUGGCGGAGuacCGc -5'
30216 5' -61.4 NC_006273.1 + 63191 0.66 0.795479
Target:  5'- --cGGCGCGGCCucgccuuugccuCCGCUUgAcGGCGu -3'
miRNA:   3'- ccuCCGCGUCGGu-----------GGCGGAgUaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.