Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30216 | 5' | -61.4 | NC_006273.1 | + | 203926 | 1.11 | 0.001149 |
Target: 5'- aGGAGGCGCAGCCACCGCCUCAUGGCGg -3' miRNA: 3'- -CCUCCGCGUCGGUGGCGGAGUACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 163915 | 0.8 | 0.141023 |
Target: 5'- aGGAGGCuGCGaucGCCGCCGCCUCGaucgcGGCGu -3' miRNA: 3'- -CCUCCG-CGU---CGGUGGCGGAGUa----CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 82927 | 0.78 | 0.190884 |
Target: 5'- uGGAGGCGCAGCUGcgcggcaagcacauCCGCUUguaCGUGGCGg -3' miRNA: 3'- -CCUCCGCGUCGGU--------------GGCGGA---GUACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 161632 | 0.77 | 0.235053 |
Target: 5'- uGGcGGCGCcgcugccgggccucGGCCGCCGCCgccaccCAUGGCGc -3' miRNA: 3'- -CCuCCGCG--------------UCGGUGGCGGa-----GUACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 120930 | 0.77 | 0.236664 |
Target: 5'- uGGAGGCGCucgccauggcGCCGCCGCCggugacgCggGGCGu -3' miRNA: 3'- -CCUCCGCGu---------CGGUGGCGGa------GuaCCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 33401 | 0.74 | 0.329408 |
Target: 5'- -uAGGCGCuggacGCgCACCGCCUCG-GGCGu -3' miRNA: 3'- ccUCCGCGu----CG-GUGGCGGAGUaCCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 54212 | 0.74 | 0.329408 |
Target: 5'- cGGAGGCGguGCCACaGgCUguUGGCc -3' miRNA: 3'- -CCUCCGCguCGGUGgCgGAguACCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 232968 | 0.74 | 0.329408 |
Target: 5'- -cGGGCaGCAGCCGCCgcgcgGCCUCGgcGGCGg -3' miRNA: 3'- ccUCCG-CGUCGGUGG-----CGGAGUa-CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 38075 | 0.74 | 0.329408 |
Target: 5'- -cGGGCaGCAGCCGCCgcgcgGCCUCGgcGGCGg -3' miRNA: 3'- ccUCCG-CGUCGGUGG-----CGGAGUa-CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 104334 | 0.74 | 0.3509 |
Target: 5'- --cGGCGCAGCUGCUGCCccguaaagUCAaaUGGCGg -3' miRNA: 3'- ccuCCGCGUCGGUGGCGG--------AGU--ACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 96045 | 0.74 | 0.357539 |
Target: 5'- aGGAGGggcgaguCGCGGgCACCGCCUCGguacccccUGGCc -3' miRNA: 3'- -CCUCC-------GCGUCgGUGGCGGAGU--------ACCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 134018 | 0.73 | 0.380297 |
Target: 5'- aGGcAGGCGaugcgcaCGGCCGCCGCCUgGuUGGUGu -3' miRNA: 3'- -CC-UCCGC-------GUCGGUGGCGGAgU-ACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 220723 | 0.73 | 0.396795 |
Target: 5'- --cGGgGUAGCCACCauGCCaUCAUGGUGa -3' miRNA: 3'- ccuCCgCGUCGGUGG--CGG-AGUACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 21210 | 0.73 | 0.404811 |
Target: 5'- gGGGGGUGgcCGGCUGCCGCCgcuGUGGCu -3' miRNA: 3'- -CCUCCGC--GUCGGUGGCGGag-UACCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 188397 | 0.73 | 0.404811 |
Target: 5'- --cGGCGCAcagauCCACCGCCUCgaccGUGGUGa -3' miRNA: 3'- ccuCCGCGUc----GGUGGCGGAG----UACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 171348 | 0.72 | 0.42946 |
Target: 5'- aGGAGGcCGC-GCCACCaaaaccgccgcGCC-CAUGGUGg -3' miRNA: 3'- -CCUCC-GCGuCGGUGG-----------CGGaGUACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 62183 | 0.72 | 0.437871 |
Target: 5'- cGGAGGCGCGGCCcuacgucaAUUGUCgcgcCGUGGCc -3' miRNA: 3'- -CCUCCGCGUCGG--------UGGCGGa---GUACCGc -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 99961 | 0.72 | 0.446376 |
Target: 5'- cGAGcGCGCAGCCGCUGCCcagaUCAcacaGGUGc -3' miRNA: 3'- cCUC-CGCGUCGGUGGCGG----AGUa---CCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 118153 | 0.72 | 0.446376 |
Target: 5'- aGAGGgaaCGCGcGCCccaGCCGCCggCGUGGCGg -3' miRNA: 3'- cCUCC---GCGU-CGG---UGGCGGa-GUACCGC- -5' |
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30216 | 5' | -61.4 | NC_006273.1 | + | 184254 | 0.72 | 0.446376 |
Target: 5'- cGGuAGGCGUcgauAGCCcucACCGCCUCGUcguccccuucccGGCGu -3' miRNA: 3'- -CC-UCCGCG----UCGG---UGGCGGAGUA------------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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